Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc217g00006 ATGAGATCCAATTCATCTTCATCCAGTATGTCAAAGAGTGATTTATCTCACATGTCGAGTTCATCTGCAGTCAGATTAAGGTCTGCAAAGCCTTGTGATTATGTTACATTTCGAAAGGCCACCAGCACAGACCCTAATTTATTTAGTGGTGTATTTCCCAGAAAACAACCTAATACAATCCAGGAAAATGGGAAATTTCCTCTCAAAGGTTTTGTTGGTATACGTACAACAACAAACATTGTTGGGACTCAAGGGGATGATGGTTGTCAACCTGTACCACCTTTCTTTGATTCCCTCAAATGGAATGAAAATTTGTCAGTTGCCCACTCTCCTTCACAAATTCTAACAAGCCTTCCAATAGACCAAGAAGGCATAAAAGACAATAATGCAAAAGATGTGCTTATAGGCAAAGATGCTGCATCCTCTAATATTGAGCTGAGGCTTGGACAACCACCTCAGAAAGGAAATCCAGTTCCATCATTTATTGGACATCCATTGTTTAGTGCCCTTGTCAGCCCTCCAAAATTGCATCCTGCAAAGCTAATGATTAATATGCATTGCAGGGAGGGGAAATTGCAGAACAATTTTTTCCATGGTTCTGGTTCCTTCAAAATAGTTGATCAACCTCAGCCTAAACTCAAAAACTATATGCCTGGTGTTAGCGATGCTTTAGGTGGTAGAGCTAGGTCAAAACCTGAAAGTGCGGCCAACAGTTTATTGTTTTCACCACTTCCACAGTTAAATCCTCAGACAGAGGGAAAGACAAAAGCTAGTGAAATTTTGATGAATGATAGTGTGCCTATCTTGTCCAAGAAACATTCTGAATTAAGTGGCATGCAGTTTGCTCCTATTAATGTTCCCTGGAATAGTAATGCTCACACTACTGGAAGGCAATTGGATTGTTCAGCAATGGGCTCCATCAAAGGTTTGGACAACAATAAAGGTGTTAACTTCGCTAAAGATCCTTATGCCAAGTTAAATTCTGGATTTGGAATTAGTAATCTAGTGAAATATCCATGTTCCATCAGAGGAGCTGTTGGCGGCAATGGTAGTTGTATTTCAACTGTTAAAGGAAACATATTTGAGTCATATAATGAATCAAGGCCTCCGCCAAATATATCTGGTGGTGTAAATGTTCTATTTGATTCTAAAAATGTGTCTCCTGTTGGAAAAAATAATCATTTTACCACAGCAACTACAATTCCATTAGAAGGAATTGTGAAGGGCTTTCCATTTCTTCTACCAAATTCTACATCAAATCAGACTACTACTTCACCACAGCAACAGGGCATTAATTTGGATAGTTCTTTGCTTGATGAAAATATGAGGTTGCTTGCATTGACACAGATATTGGAGTTATCTAAGCAACAACAGGCATTGCATTTTAATGAAATGAATCAAAAGCACAGGATGTCCGGCAACACTTCAGAAGTTCAGCCTGATATATATGAGGCTTCGACGTCTGAACAGTTCTCTTTTGGTTTGAACAGATACTGTTTCTCTGGCTTGACACCAGTACCTTTACATTCTAAAGAAAAGAAACCGCAATGTAAACAGGCCTACAATCTTCAAAATGATGGACAATCATTGAGCCTTGGAGTAAACAAAGACAATGCACTTTTTCAGAGATCAAGTGCATCCAACAATTGCACTGAGAAACCATTGGATATGAATCTGGGAAAATACAAATTTGCTGCAGGCGAAAACTGTTCCGGTACCAATTTTTTCTTGGGAAATGGACCAACTTATAATTTTAAACAATTTACAAAATCTAGTGATGAAACTTCTTTGAAGATAATTTCAAAGGATACTCATCAATGGAGAGAGGTACCATGTAAGCTGCGGAAAGCAGATTGTGATGCAAAATCTTTAGATCCAATATTTACAATTATGGACTGGGAAGGACAGGATGATGTTCAAAATGCTTCTGTGGAGTTCAATAAGGTTGATTCTTGTACTATTGATGGTGGAGACACTTCTGATTTCAACAACCTTGCACTTGATGAGGGCTCAGTAATCAATAAAGGTTGGTCACCTGATGCAGTTGAAAGTGAAAGAAGTTCTGGGTTTCTAGGATCCACATGTGAGAGTTACTTGAATAAAGGTCCTTTGAGAGTCATAAATGATAAACCATGTTGTAGTCTCCTTGATGAGCTTAAACTGTTAGATTCTTTGACCAGGAAAAAAGTTCGGGACCGAAGTCATATACTTTCTGGTAATTTTAAAGCCAATCAATCACAAAATGTCAAGGATTTAAAAGGAAAAAAGAAAAGAAGTAGGCTGAGGAATCTAGATGCCTCATTGTCTTCCAGAGCACCTTCCTTATTGCATAACAAGAATGATGAAATGCAAATGTACTTTCCATCTAGCCAGCAAAAATCATCTACTAAGGCTGTGCTTCTCCAGTCTAATGCCAAGCGTAAACACACAATTTCAGGTAACCATTATCTGAGTGAACATCACGGTGAAAAAGATGATAGTTCTGTGTCAGAATCGAGTTTAAATGACGAGTTCCGTAGCTTGTGCGAATTTGCTGGAAGAAAGAAACCAAGAGCAGATTACCCTTCTGATTGTGTTGGGCATTTTCAAATGCAAGATCCAAATTTGGAGAAAACTGAAATTGCCAAGGTGGAGTCTTTGTTTAGCAGGGGGACAAATGGCAATAGAATCACAAGGCCAATAGTATGTGGAGAATATGGTGAAATATGTAGTGAAAAATTGGGTGGAGAATTGCCAAAAATGCCAAAAATTGTTTCTCTTAGTAAGGTTCTTAAAAGTTCAAAAAGATGTAAGGTACCTAAATTAACCTCGAAAAAGAAACTAAAGAGATTGAGCTTTGGAAGTAATGAACACTGCTGTGGTCAACCCGGTTTCGAGGGGGGCAACACACCACATGTTATTTTCAAAGGAAAGAGAGACTCCAAAGCTATACAGGGTAATAGTATTGTAAATATAGCTGCATTAAAGCTGAAGAGCAAGGAAATTCAGAAAGTACGCAGTATTAATGAACTGACTGCTAAAGAAACCAAAGTGAAGGATACTGTGGAGTATGGTGAAGATACGAAGCATGGTTGCTGTAACACCGAAAGCAGAAACTCTGTTCAAGAATGCTTGGGCATCTCCATCCAAAATCCAGATGCATTCTGCTCTGTGTGCCAAAACTCAAGCAATGATGACAATAACTGTTTGTTGGAGTGTAGTCGGTGTCTAATTAGAGTTCATCAGGCTTGCTATGGAATCCCCACATTACCTAGAAAAGGCCGTTGGTGTTGTAGACCATGCCGAACAAACTCAAAAGATATTGCTTGTGTTCTATGTGGTTATGGAGGGGGAGCCATGACTCGAGCAATACAGAATCGCACAGTGGTGAAAAGCCTCTTAAAAGCGTGGAGTATTGAAAATAGGGGCATGTCTAAGCATACTACTACACCTGAAATTTTTGAGAAGGAAAGAGATGTATTTGATTCCACAAAATATGACCTAAAATTTGACCAAACTTGCGGTTTGAAGTCTGTTAATGATGAGAACTCAAGATCAGACCAGTTGAAAGTTGAGATGTCAACAAATCAAATGCAAAATGTCCCATACAATATTTTTAAGGTTCATAACAGCATTACAGCAGGAGTTCATGATACATCTGTGAAGCAGTGGATTCATATGGTTTGTGGGCTTTGGACTCCTGGAACAAGATGCCCTAATGTTAATACAATGAGTGCTTTTGATGTATCTGGTGTTACACGTCCCAGAGAAGATGTGGTTTGTTGCATCTGCAACCGCTGGGGTGGCTCTTGTATAGAGTGCCGGATTGTTGATTGTTCGGTCAAGTTTCATCCTTGGTGTGCTCATCAGAAGAACCTGTTGCAATGTGAGACTGAAGGTGATGATGATGAGAAGGTTGGATTTTATGGAAGATGTATGCTTCATGCTGTTGACCCTAGATGTCACCCCAATTATGATCCTGTTGATGATATAGATAGCTTAGAAGAAAGGGAATTTACCTGTGCCAGGACAGAGGGTTACAAGGGCCGTAAAAGGGATGGTTATCATAGACATTGTTACAATGGCTTAAAGGGAAAGGGTGCAAGTGGGTGCCTTGTTCCTGAAGAACAGTTAAATGCTTGGATTTACATTAACGGGCAGAAATTGTGTCCACAAAGACTCCCTAACCCTAAACCCGCATCAGATATTGAGCATGATTGTCGGAAGGAATATGCTCGGTACAAGCTAGCAAAGGGCTGGAAACACCTTGTTGTTTACAAATCTGGAATTCATGCCCTTGGTCTTTACACTTCTCGATTCATTTCCGGTGGTGAAATGGTTGTTGAGTATGTTGGCGAAATTGTGGGGTCACGGGTTGCTGACAAAAGAGAAATTGAATATCAATCTGAAAGAAAACTTCAATACAAGGGTGCTTGCTACTTCTTCAGAATAGACAAAGAACATATTATTGATGCCACGAGGAAAGGGGGCATAGCCCGTTTTGTTAACCACTCATGCTTGCCAAATTGCGTGGCGAAAGTGGTTACTATAAGGCATCAGAAGAAGGTTGTCTTTTTTGCAGAGAGGAACATATATCCTGGTGAAGAGATAACATACGATTACCACTTCAACAACGAAGATGAAGGAAAGAAGATTCCATGTTATTGCAATTCCAAAAATTGCAGGCGCTATATGAACTGA 4680 0.3942 MRSNSSSSSMSKSDLSHMSSSSAVRLRSAKPCDYVTFRKATSTDPNLFSGVFPRKQPNTIQENGKFPLKGFVGIRTTTNIVGTQGDDGCQPVPPFFDSLKWNENLSVAHSPSQILTSLPIDQEGIKDNNAKDVLIGKDAASSNIELRLGQPPQKGNPVPSFIGHPLFSALVSPPKLHPAKLMINMHCREGKLQNNFFHGSGSFKIVDQPQPKLKNYMPGVSDALGGRARSKPESAANSLLFSPLPQLNPQTEGKTKASEILMNDSVPILSKKHSELSGMQFAPINVPWNSNAHTTGRQLDCSAMGSIKGLDNNKGVNFAKDPYAKLNSGFGISNLVKYPCSIRGAVGGNGSCISTVKGNIFESYNESRPPPNISGGVNVLFDSKNVSPVGKNNHFTTATTIPLEGIVKGFPFLLPNSTSNQTTTSPQQQGINLDSSLLDENMRLLALTQILELSKQQQALHFNEMNQKHRMSGNTSEVQPDIYEASTSEQFSFGLNRYCFSGLTPVPLHSKEKKPQCKQAYNLQNDGQSLSLGVNKDNALFQRSSASNNCTEKPLDMNLGKYKFAAGENCSGTNFFLGNGPTYNFKQFTKSSDETSLKIISKDTHQWREVPCKLRKADCDAKSLDPIFTIMDWEGQDDVQNASVEFNKVDSCTIDGGDTSDFNNLALDEGSVINKGWSPDAVESERSSGFLGSTCESYLNKGPLRVINDKPCCSLLDELKLLDSLTRKKVRDRSHILSGNFKANQSQNVKDLKGKKKRSRLRNLDASLSSRAPSLLHNKNDEMQMYFPSSQQKSSTKAVLLQSNAKRKHTISGNHYLSEHHGEKDDSSVSESSLNDEFRSLCEFAGRKKPRADYPSDCVGHFQMQDPNLEKTEIAKVESLFSRGTNGNRITRPIVCGEYGEICSEKLGGELPKMPKIVSLSKVLKSSKRCKVPKLTSKKKLKRLSFGSNEHCCGQPGFEGGNTPHVIFKGKRDSKAIQGNSIVNIAALKLKSKEIQKVRSINELTAKETKVKDTVEYGEDTKHGCCNTESRNSVQECLGISIQNPDAFCSVCQNSSNDDNNCLLECSRCLIRVHQACYGIPTLPRKGRWCCRPCRTNSKDIACVLCGYGGGAMTRAIQNRTVVKSLLKAWSIENRGMSKHTTTPEIFEKERDVFDSTKYDLKFDQTCGLKSVNDENSRSDQLKVEMSTNQMQNVPYNIFKVHNSITAGVHDTSVKQWIHMVCGLWTPGTRCPNVNTMSAFDVSGVTRPREDVVCCICNRWGGSCIECRIVDCSVKFHPWCAHQKNLLQCETEGDDDEKVGFYGRCMLHAVDPRCHPNYDPVDDIDSLEEREFTCARTEGYKGRKRDGYHRHCYNGLKGKGASGCLVPEEQLNAWIYINGQKLCPQRLPNPKPASDIEHDCRKEYARYKLAKGWKHLVVYKSGIHALGLYTSRFISGGEMVVEYVGEIVGSRVADKREIEYQSERKLQYKGACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVVTIRHQKKVVFFAERNIYPGEEITYDYHFNNEDEGKKIPCYCNSKNCRRYMN 1559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc217g00006 1559 SUPERFAMILY SET domain 1413 1559 IPR046341 -
Stsc217g00006 1559 SMART set_7 1414 1541 IPR001214 GO:0005515
Stsc217g00006 1559 ProSiteProfiles Extended PHD (ePHD) domain profile. 1164 1309 IPR034732 -
Stsc217g00006 1559 Pfam SET domain 1427 1534 IPR001214 GO:0005515
Stsc217g00006 1559 SUPERFAMILY FYVE/PHD zinc finger 1044 1099 IPR011011 -
Stsc217g00006 1559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1034 1109 IPR013083 -
Stsc217g00006 1559 ProSiteProfiles SET domain profile. 1414 1535 IPR001214 GO:0005515
Stsc217g00006 1559 CDD ePHD 1211 1299 - -
Stsc217g00006 1559 SMART PHD_3 1253 1309 IPR001965 -
Stsc217g00006 1559 SMART PHD_3 1048 1095 IPR001965 -
Stsc217g00006 1559 Pfam PHD-zinc-finger like domain 1210 1293 - -
Stsc217g00006 1559 Pfam PHD-finger 1060 1095 - -
Stsc217g00006 1559 CDD SET_SETD1-like 1416 1555 - -
Stsc217g00006 1559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1197 1310 IPR013083 -
Stsc217g00006 1559 SMART PostSET_3 1543 1559 IPR003616 -
Stsc217g00006 1559 MobiDBLite consensus disorder prediction 1 23 - -
Stsc217g00006 1559 ProSiteProfiles Zinc finger PHD-type profile. 1046 1097 IPR019787 -
Stsc217g00006 1559 Gene3D SET domain 1313 1559 IPR046341 -
Stsc217g00006 1559 ProSiteProfiles Post-SET domain profile. 1543 1559 IPR003616 -
Stsc217g00006 1559 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 415 1559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc217g00006 Stsc-Chr217 43379 53784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc217g00006 1416 1555 C2H2 Transcription Factor Family AT2G23740 32.919 3.47e-14 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc217g00006 SET 5.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc217g00006 - - ahf:112697527 2570.04