Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc217g00002 ATGTCGCACTACGTTTTGTTGCTTTGCTCCTTCAAAGAACAATTGCAGCAGCATGTCCGCGTCCACGCAATGGAAGCAGTAATGGCTTGTTGGGAGATCGAACAATCCTTACAAAGTTTAACAGGAGTTTCGCCCGGAGAAGGTACAGGGGCAACAATGTCCGACGACGAAGATGATCAAGTTGATAGCGATGCCAATCTGTTCGACACGAGTTTGGATGGAACAGATAGCATGGGGTTTGGTCCTCTTATTCCAACCGAGAACGAGAGGTCCCTCATGGAGCGTGTAAGACAAGAATTAAAGCATGAATTGAAAAATGGTTATAAGGAGAAAATTGTCGACATAAGAGAAGAAATCTTGCGCAAGAGACGGGCAGGAAAACTTCCCGGCGACACCACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAATGGCCTTACCCTACAGAGGAAGATAAGGCAAGGCTGGTGCAGGAAACTGGTCTGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAGAGGAAGAGGAATTGGCACAGCAATCCTTCTTCTTCCACTGTCTTGAAGAGCAAGCGCAAAAGGTGA 591 0.4569 MSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDTSLDGTDSMGFGPLIPTENERSLMERVRQELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKSKRKR 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc217g00002 196 MobiDBLite consensus disorder prediction 41 60 - -
Stsc217g00002 196 SMART HOX_1 121 186 IPR001356 GO:0003677
Stsc217g00002 196 ProSiteProfiles ELK domain profile. 99 119 IPR005539 GO:0003677
Stsc217g00002 196 ProSiteProfiles 'Homeobox' domain profile. 119 182 IPR001356 GO:0003677
Stsc217g00002 196 FunFam homeobox protein knotted-1-like 3 isoform X1 120 181 - -
Stsc217g00002 196 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 182 - -
Stsc217g00002 196 SUPERFAMILY Homeodomain-like 121 185 IPR009057 -
Stsc217g00002 196 Gene3D - 118 191 - -
Stsc217g00002 196 SMART KNOX2_2 1 42 IPR005541 GO:0003677|GO:0005634
Stsc217g00002 196 Pfam KNOX2 domain 1 41 IPR005541 GO:0003677|GO:0005634
Stsc217g00002 196 Pfam ELK domain 99 120 IPR005539 GO:0003677
Stsc217g00002 196 CDD homeodomain 122 183 IPR001356 GO:0003677
Stsc217g00002 196 SMART ELK_2 99 120 IPR005539 GO:0003677
Stsc217g00002 196 Pfam Homeobox KN domain 139 178 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc217g00002 Stsc-Chr217 22823 25111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc217g00002 1 196 Homeobox Transcription Factor Family AT5G25220 92.347 2.33e-133 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Stsc217g00002 KNOX2 6.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc217g00002 - - gmx:100812596 380.948