Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc217747g00001 ATGGCACAAGGTGATGTGGCTTCTCAACAGATCACTCAAATCGAAGAGCAGCCTGATCATTCAGTTGGAGATGAATTAGAGGGTGGAGCCCGTCCACTGAATTTGATTGAAGAAGTGCTAAATATGACTGATGAAGGTGAGTGTTGGATTCTTGGCAGTATCGTTTCTGTTGAGAGTGGTGTCCATGATTGGTGCTACTTAGCATGTAACAACTGTCCTAAGAAAGTCATTGAGGTGAAGAATGGATACAAATGTAAAAAGTGCTTGAGAATCCTTGCTGATCCACTTGTGAGATATAAGCTGAATATTATAGTTGCTGATGGAACTGGGTGCTTGAATCTGATTGTTTGGAACCAAGAGGGAAAGCTCATTCTTGGGAAATCTGCTAATGAAGTCAGAGCTTTGCAAAAAGCAGAGGGTGAGAAGGCACAGCCCAAAATATTTGAGTCACTGCTTGAGAAGCGTTTTCTCTTCAAGGATGAAGTTTCAAGCAGGAACATCAGCTCAATTGACCTGGTTTATAGTGTTCAGAAGATTTGTGACGATGAAACACTGATTTGCATCTATTCATCAGATGCTTCTATT 585 0.412 MAQGDVASQQITQIEEQPDHSVGDELEGGARPLNLIEEVLNMTDEGECWILGSIVSVESGVHDWCYLACNNCPKKVIEVKNGYKCKKCLRILADPLVRYKLNIIVADGTGCLNLIVWNQEGKLILGKSANEVRALQKAEGEKAQPKIFESLLEKRFLFKDEVSSRNISSIDLVYSVQKICDDETLICIYSSDASI 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc217747g00001 195 CDD RPA1_DBD_C 50 179 IPR047192 -
Stsc217747g00001 195 Pfam Replication factor-A C terminal domain 63 163 IPR013955 -
Stsc217747g00001 195 SUPERFAMILY Nucleic acid-binding proteins 34 178 IPR012340 -
Stsc217747g00001 195 MobiDBLite consensus disorder prediction 1 17 - -
Stsc217747g00001 195 MobiDBLite consensus disorder prediction 1 25 - -
Stsc217747g00001 195 Gene3D - 20 184 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc217747g00001 Stsc-Chr217747 76 1269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc217747g00001 66 141 Core DNA Replication Machinery Family AT5G61000 38.961 3.60e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc217747g00001 - - ahf:112718168 209.92