Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc217718g00001 ATGGCTGGGCAATCAGACGCTGAGCTCTCATTATTTTCAGCAGAGGAGCTTGAATTCATTGCTGAGGATGAGATTGTCGACATTGTGCCCAATCTCAAGATGGGTCCTCTTAATTTCATCTCTGGAGATTTTGGCCCATTTATCCCACAGATTGTTGCCCAAGTACCTCTTTGGCTGGCTGTTGCACTAAAGAAGAGGGGCAAGTGCTCCATTTGTCCTCCTCAATGGATGTCTGTTGGTGAGCTTCCTTTTTTCTCATCTCTATCCATTTTTTCCTTTCAATCTTAA 288 0.441 MAGQSDAELSLFSAEELEFIAEDEIVDIVPNLKMGPLNFISGDFGPFIPQIVAQVPLWLAVALKKRGKCSICPPQWMSVGELPFFSSLSIFSFQS 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc217718g00001 95 Gene3D - 12 77 - -
Stsc217718g00001 95 Pfam GINS complex protein 54 82 IPR021151 -
Stsc217718g00001 95 FunFam DNA replication complex GINS protein PSF2 12 77 - -
Stsc217718g00001 95 CDD GINS_B_Psf2 13 74 - -
Stsc217718g00001 95 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 7 82 IPR007257 GO:0005634|GO:0006260
Stsc217718g00001 95 SUPERFAMILY PriA/YqbF domain 12 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc217718g00001 Stsc-Chr217718 172 1245 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc217718g00001 1 82 Core DNA Replication Machinery Family AT3G12530 69.512 1.81e-38 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc217718g00001 K10733 - gmx:100780528 143.28