Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc217286g00001 ACCAATGTGCTCCAAAATCTAATGTATGGCACTAGACTATTGATAAATCCAGATATTCCTGAGACAATGATGCTTCGGAAAAGGGGGGGTGCACATTCTCTGTCTATGCCAAATGGTCAACCCAGTTCTATTGTTGATGAGTTTCTGTGTCTAACCGAGAGAAAGACGATAGAAGAATTGCGTGATATTGAGGATGTGGGATTTTATGTTGTTATTGCCACTGTTCTTGCTGTTGATTCCGTTCCATCTGGGTGGTACAAATCTTGTGTTTGCAACCGAAAAGTTGAAGCTAGGAATGGAATGTGGTTTTGTAATTGTTGTGATAAATATGTGAAGAATTTGCTTTATAGATACAAGTTAGATTTGGTGGCTTATGATGGCACTGCTGCAACAACCTTTATTGTGTATGATAGGGAGGCTACGATCCTGCTTGGGTGGACCTGTTCTGATCTGATACAAGAGCTGAAT 468 0.4038 TNVLQNLMYGTRLLINPDIPETMMLRKRGGAHSLSMPNGQPSSIVDEFLCLTERKTIEELRDIEDVGFYVVIATVLAVDSVPSGWYKSCVCNRKVEARNGMWFCNCCDKYVKNLLYRYKLDLVAYDGTAATTFIVYDREATILLGWTCSDLIQELN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc217286g00001 156 Pfam Replication factor-A C terminal domain 68 152 IPR013955 -
Stsc217286g00001 156 Gene3D - 50 156 IPR012340 -
Stsc217286g00001 156 SUPERFAMILY Nucleic acid-binding proteins 52 154 IPR012340 -
Stsc217286g00001 156 CDD RPA1_DBD_C 57 156 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc217286g00001 Stsc-Chr217286 54 1384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc217286g00001 11 151 Core DNA Replication Machinery Family AT5G08020 26.582 3.90e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc217286g00001 - - ahf:112729129 174.481