Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc216410g00001 ATGGTTGTGGCGAAGGTGAAGAGACAGAAGCTTCAAGCATGCATCACATGCCCTCTCTGCCACCACCTCCTCCGTGACGCCACCACCATCTCCCTCTGCCTTCACACCTTTTGCAGGAAGTGCATATATGAGAAGCTTTCAGATGAAGACATGGATTGTTGTCCTGTATGTTACATTGATCTGGGATGCCTTCCACTCCAAAAACTCAGGCCAGACCATAATTTGCAGGATATTAGGGCCAAAATATTCCCTTTTAGGCGAAGAAAAATCGAAGCCCCAGAAGTTGTTACTTCGATTACCTTGCCTGCAAAGAGGAAGGAAAGATCACTTTCATCGTTGGTGGTTAATGCTCCCAAAGTTTCAAATCAGAATGGCTTCACTGGAAAGAGAACAAAAACTGGCACAAGAAAGAGTGAAGATTCTATAAAGAATGAAGAAACATGTGGTGATGATAATCTGGGTTCTTTGGTGGCTGATCCTTCTAAGAAGAGGCCTGCTGAAGATACCAAGAACAGTATGGAACCTGCAGAAGGGAAGGGTGATCTCTGGACGCCCTTGAACTGTCTCGTTGAAGCTGCCAATCGAACAAAGTCCTCCAGG 600 0.4567 MVVAKVKRQKLQACITCPLCHHLLRDATTISLCLHTFCRKCIYEKLSDEDMDCCPVCYIDLGCLPLQKLRPDHNLQDIRAKIFPFRRRKIEAPEVVTSITLPAKRKERSLSSLVVNAPKVSNQNGFTGKRTKTGTRKSEDSIKNEETCGDDNLGSLVADPSKKRPAEDTKNSMEPAEGKGDLWTPLNCLVEAANRTKSSR 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc216410g00001 200 ProSiteProfiles Zinc finger RING-type profile. 17 57 IPR001841 -
Stsc216410g00001 200 ProSitePatterns Zinc finger RING-type signature. 33 42 IPR017907 -
Stsc216410g00001 200 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 200 IPR044807 GO:0004842
Stsc216410g00001 200 MobiDBLite consensus disorder prediction 132 147 - -
Stsc216410g00001 200 SUPERFAMILY RING/U-box 11 81 - -
Stsc216410g00001 200 Pfam Zinc finger, C3HC4 type (RING finger) 17 57 - -
Stsc216410g00001 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 123 IPR013083 -
Stsc216410g00001 200 SMART ring_2 17 57 IPR001841 -
Stsc216410g00001 200 MobiDBLite consensus disorder prediction 161 175 - -
Stsc216410g00001 200 MobiDBLite consensus disorder prediction 121 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc216410g00001 Stsc-Chr216410 1 1151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc216410g00001 2 197 C3H Transcription Factor Family AT2G30580 54.299 1.76e-75 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc216410g00001 K16277 - gmx:100783999 291.582