Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc215757g00001 ATGACGCCGTCTTTCGCGAAAATCAGCCACACCATTGAAAGTTTAACTGATAGGAGGTTTACACTTGGTCATTTGGCTCAGTTGAAATTTTTGTTGCCTGAGGCAATTGTGACTAAGAAAGGAGATGAGATTCCGGAAGATGCGCTACCCGAGCCATTCAGCCCAAAGCAACATCATCTATCAGACATATTGAAAAGGCCTTTCTCATCTAAGGAAATAAAATCATCAGTAGTCATTCGGGATAATGACACTAAAATAGAGTTGTCAGAACCAGTCAGGGCATCAATTGAACCCCTTAACCGGCAACCATCAGTAGCCTCTCATGTACCTCGATCTTTCACAAGAAGGTTTTCTCAGATGAAGGAAAATGGGATAGATAATGACGCACAGGAAAAATTGCCATCAGATTCATTCCAAACTGTGGTTCTACCGGATTCAGAGTCAAACCTGAGTGGAAAACCGACCTCAGAAGGAGCCAGCAATGAAGTATGCCTAACAAATTGTTCTTCATCTGGTGCTCCACCTGCTACTCCATGCAAAACCATTGAACATGCAGAAAATAATGATGGGTCTCAAAAAAGCTTTGGTGCT 591 0.4247 MTPSFAKISHTIESLTDRRFTLGHLAQLKFLLPEAIVTKKGDEIPEDALPEPFSPKQHHLSDILKRPFSSKEIKSSVVIRDNDTKIELSEPVRASIEPLNRQPSVASHVPRSFTRRFSQMKENGIDNDAQEKLPSDSFQTVVLPDSESNLSGKPTSEGASNEVCLTNCSSSGAPPATPCKTIEHAENNDGSQKSFGA 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc215757g00001 197 SUPERFAMILY "Winged helix" DNA-binding domain 2 40 IPR036390 -
Stsc215757g00001 197 PANTHER DNA REPLICATION FACTOR CDT1 2 40 IPR045173 GO:0003677|GO:0030174|GO:0071163
Stsc215757g00001 197 MobiDBLite consensus disorder prediction 145 197 - -
Stsc215757g00001 197 MobiDBLite consensus disorder prediction 145 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc215757g00001 Stsc-Chr215757 19 1307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc215757g00001 3 40 Core DNA Replication Machinery Family AT2G31270 57.895 1.09e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc215757g00001 K10727 - gmx:100808801 85.8853