Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc215004g00001 ATGGCATCTGCCGCTAATGTTTTCATTCACCGGTTGCCGGAAGTGTCTGCGCATGAGCTCCACGTCCTTGCAGTTGATGACAGCCATGTTGATCGCAAGGTCATTGAACGCTTGCTCAAAATCTCTTCATGCAAAGTAACAGTCGTGGACAGTGGAACTAGAGCTTTACAGTATCTAGGGTTGGATGGTGGAGAGGAAAATAGTTCAATTGATTTTGATAGCATGAAGGTTAATCTGATAATGACCGACTATTCGATGCCGGGGATGACAGGTTTTGAACTCCTAAAGAAGATCAAGCAGGAATCATCAATTTTTAGAGAGATTCCAGTGGTGGTGATGTCTTCTGAGAATATATTGACCCGAATTGATAGGTAA 375 0.432 MASAANVFIHRLPEVSAHELHVLAVDDSHVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGGEENSSIDFDSMKVNLIMTDYSMPGMTGFELLKKIKQESSIFREIPVVVMSSENILTRIDR 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc215004g00001 124 Gene3D - 20 123 - -
Stsc215004g00001 124 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 124 IPR045279 GO:0009736
Stsc215004g00001 124 ProSiteProfiles Response regulatory domain profile. 21 124 IPR001789 GO:0000160
Stsc215004g00001 124 SMART REC_2 20 122 IPR001789 GO:0000160
Stsc215004g00001 124 SUPERFAMILY CheY-like 19 117 IPR011006 -
Stsc215004g00001 124 Pfam Response regulator receiver domain 22 117 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc215004g00001 Stsc-Chr215004 563 1491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc215004g00001 20 124 Response Regulator Gene Family AT3G48100 82.857 4.69e-57 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc215004g00001 Response_reg 5.9e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc215004g00001 K14492 - gmx:100819165 188.734