Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc214g00006 | ATGGGAGACAGAGAGAATTTCGATGTAGATAGAGACCGGGATCCTGTGAATTATTCGACTAGTATGGCTTCGGATTGGAGGTTCGGTGTTGGGAACTTTGCGAATTCAATGGTGGATTCATATGTTACGAACTTTTGGGACCACTCCAATTCCCAGAATTTGGGGTTTTGTGACATTAATATTCAGAACAATGGTGGCTCTTCGAACATGAATGCGGTCGGAAAAGATGGATTCGGCTATGGTAGAGGTGGCCATGATCATAGGACACTAGAAATGGGTTGGAACCATGCTAGTTCTCTGTTGAAGGGTGATAACAATGCATTCTTGCCAAATGGGCCAGCAATGCTTCCCCAGAGTTTATCTCAGTTTCCGGGGGATTCCGGATTCATTGAGCGGGCTGCAAGACTCTCGTGCTTCGGCGCAGGGTCCGGGGACATGGTGAGTTCATTTGGGATTCCTCAATCCATGAACCTTTATGCTAGGATTGGGGGAACAATGCAGGGAACTGGAGATGCTCTTTTAGGACACGGATTAAGATCGGCAGCACTCGGAGGACAATCTCATAAAAGTGATCCGAATTTAGTTGAAGCTGCGAAAGATGATGATAAAGAAATGTCTTTACAGGATGATAAAAGAAGCAAAAATCTTGCAGTATCTCATGATGAAGGGAAACAAGCTCTTGGTGGTTCTGCTAATGAATCTGATCGAGCAGAATCGAGTGGCCGAGACGATTCCCCAATGTTGGAGTGTACAAGTGGGGAGCCTTCGAATAAGGGACTAAGCTCAAAGAAAAGGAAAAGAATTGGGCAGGATGCTGATAAAGATAAAGCCAATGGAAGTCCTGAACAATCCGGTGCAGATGCGAAGGAGAATTCCGGGAGTCGACAGCAGAAGGAGGAGCAAAAACCCTCTCCATCAACCAAGGGGTCTGGGAAGAACGCCAAGCAGGGTTCTCAAGCATCCGATCCGCCTAAGGAGGAGTACATACACGTTAGGGCTCGCCGGGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTAAGGAGGGAAAAGATCAGCGAGCGAATGAAGTTTCTTCAAGACCTTGTACCCGGATGCAGCAAGGTCACCGGCAAGGCAGTGATGCTCGATGAAATTATAAACTATGTACAGTCTCTTCAAAGACAGGTTGAGTTTTTGTCAATGAAACTTGCCACGGTAAATCCACGGATGGATTTTAATATCGAGGGATTGCTTGCTAAAGAAATTCTTCAGCAACGGGCCGGTACTTCTTCCGCACATGGGTTTCCTCCAGAATTGTCCATGGCTTTTCCGCCATTACATCCGCCTCGACCAGGACTTCTTCCTTCAGCTCTTCCTAGCATGGCAAATTCATCAGATGTACTTCGGCGGGCGATTCAACCAAATTTGGCTCACTTGAATGGAGGATTTAAGGACCCAAATCAGCTTCCTGAAGTCTGGGATGATGAGCTTCACAACGCTGTACAGATGACATTTCCGACACCTGCCCCGCCGAGTTGCCTAGACTTGGATGGTAAGCTAAGCTAA | 1551 | 0.4707 | MGDRENFDVDRDRDPVNYSTSMASDWRFGVGNFANSMVDSYVTNFWDHSNSQNLGFCDINIQNNGGSSNMNAVGKDGFGYGRGGHDHRTLEMGWNHASSLLKGDNNAFLPNGPAMLPQSLSQFPGDSGFIERAARLSCFGAGSGDMVSSFGIPQSMNLYARIGGTMQGTGDALLGHGLRSAALGGQSHKSDPNLVEAAKDDDKEMSLQDDKRSKNLAVSHDEGKQALGGSANESDRAESSGRDDSPMLECTSGEPSNKGLSSKKRKRIGQDADKDKANGSPEQSGADAKENSGSRQQKEEQKPSPSTKGSGKNAKQGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNIEGLLAKEILQQRAGTSSAHGFPPELSMAFPPLHPPRPGLLPSALPSMANSSDVLRRAIQPNLAHLNGGFKDPNQLPEVWDDELHNAVQMTFPTPAPPSCLDLDGKLS | 516 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc214g00006 | 516 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 230 | 429 | IPR024097 | GO:0006355 | |
Stsc214g00006 | 516 | MobiDBLite | consensus disorder prediction | 298 | 320 | - | - | |
Stsc214g00006 | 516 | Gene3D | - | 334 | 407 | IPR036638 | GO:0046983 | |
Stsc214g00006 | 516 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 337 | 387 | IPR011598 | GO:0046983 | |
Stsc214g00006 | 516 | CDD | bHLH_AtBPE_like | 327 | 412 | - | - | |
Stsc214g00006 | 516 | SMART | finulus | 343 | 393 | IPR011598 | GO:0046983 | |
Stsc214g00006 | 516 | MobiDBLite | consensus disorder prediction | 259 | 280 | - | - | |
Stsc214g00006 | 516 | MobiDBLite | consensus disorder prediction | 199 | 219 | - | - | |
Stsc214g00006 | 516 | FunFam | Basic helix-loop-helix transcription factor | 334 | 406 | - | - | |
Stsc214g00006 | 516 | MobiDBLite | consensus disorder prediction | 199 | 325 | - | - | |
Stsc214g00006 | 516 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 335 | 406 | IPR036638 | GO:0046983 | |
Stsc214g00006 | 516 | Pfam | Helix-loop-helix DNA-binding domain | 340 | 388 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc214g00006 | Stsc-Chr214 | 33269 | 37287 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc214g00006 | 4 | 500 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G68920 | 42.913 | 1.58e-110 | 335 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Stsc214g00006 | HLH | 6.5e-06 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc214g00006 | - | - | gmx:100797720 | 640.188 |