Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc214720g00002 ATGGCTGGAAAAGGCGAAGGTCCGGCGATTGGAATCGATTTGGGAACGACGTACTCGTGCGTCGGTGTTTGGCAGCATGATCGTGTTGAGATCATAGCCAACGATCAGGGTAACAGGACAACACCTTCCTATGTGGCTTTCACTGACACGGAGCGCTTGATCGGAGATGCCGCCAAGAACCAGGTGGCCATGAACCCTACTAACACCGTCTTCGATGCGAAGCGTTTGATTGGAAGAAGATTTAGCGATGCATCGGTGCAGAGTGACATGAAACTGTGGCCGTTCAAGGTGATCCCAGGCCCCAGTGACAAGCCTATGATCGTGGTGAACTACAAGGGAGAGGAGAAGCAATTCTCCGCTGAGGAAATCTCCTCCATGGTTCTCATGAAGATGAAGGAGATTGCAGAGGCGTACCTAGGCTCCACCATAAAGAATGCCGTGGTCACTGTCCCTGCTTACTTCAATGACTCCCAACGTCAAGCTACCAAAGATGCCGGCGTCATCTCTGGGCTCAATGTCATGCGTATCATCAATGAGCCTACCGCCGCTGCCATTGCTTACGGCCTTGACAAGAAGGCCGGAAGCACCGGCGAGAAGAATGTTCTGATCTTTGATCTTGGTGGTGGTACTTTTGATGTTTCGTTGCTTACAATTGAAGAGGGTATCTTTGAGGTGAAGGCTACAGCTGGTGATACTCACTTGGGTGGTGAGGATTTTGATAACAGGATGGTGAACCATTTTGTCCAGGAGTTCAAGAGAAAGAACAAGAAAGACATCAGTGGGAATGCTAGGGCTCTTAGGAGATTGAGAACTGCATGTGAAAGGGCAAAGAGGACCTTGTCTTCCACTGCCCAAACAACCATTGAGATTGATTCTCTCTATGAGGGTATTGATTTTTACACCACCATTACCCGTGCTAGGTTTGAGGAGCTGAACATGGATCTCTTCAGGAAGTGCATGGAACCTGTTGAGAAGTGTCTGAGGGATGCTAAGATGGATAAGAGTAGCGTCCATGATGTTGTTCTTGTGGGTGGTTCTACTAGAATTCCTAAAGTTCAGCAATTGTTGCAGGACTTCTTCAACGGGAAGGAGCTTTGCAAGAGCATTAACCCAGATGAGGCCGTTGCCTATGGTGCTGCCGTTCAGGCCGCCATTCTCAGCGGCGAGGGCAACGAGAAAGTGCAGGATCTTCTGTTGTTGGATGTCACTCCTCTCTCCCTTGGTTTGGAGACTGCAGGAGGTGTCATGACTGTGTTAATTCCCAGGAACACTACCATTCCCACCAAGAAGGAACAAGTGTTCTCAACTTACTCTGATAACCAACCTGGTGTGTTGATTCAGGTTTATGAANNNNNNNNNNGAACAAGGACCCGTGATAACAATTTGCTTGGCAAGTTTGAGTTGTCTGGCATACCTCCTGCTCCTAGGGGTGTCCCACAGATTAATGTTTGCTTCGACATTGATGCAAATGGTATTTTAAATGTATCTGCGGAGGACAAGACAACAGGGCAGAAGAACAAGATCACAATTACAAATGACAAGGGTAGGCTCTCCAAGGAGGAGATTGAGAAGATGGTGCAGGAAGCGGAGAAGTATAAAGCAGAGGACGAAGAACACAAGAAGAAAGTGGAGGCCAAGAATGCACTCGAGAATTATGCCTACAACATGAGGAACACTATCAAGGATGATAAGATTGCTTCCAAGCTTTCTGCCGATGACAAGAAGAAAATTGAAGATGCAATTGAGGAAGCTATCCAGTGGCTTGAAGGGAACCAACTTGCTGAGGCTGATGAGTTTGAGGACAAGATGAAGGAGTTGGAAGGCCTTTGCAATCCCATCATTGCTAGAATGTACCAAGGTCCCGGAGGTGAAGCTGGCGGTGCCATGGATGACGATGGTCCTGCTGCTGGCAGCGGAAGCGGTGCTGGTCCCAAAATTGAGGAAGTCGACTAA 1953 0.4803 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQSDMKLWPFKVIPGPSDKPMIVVNYKGEEKQFSAEEISSMVLMKMKEIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEXXXXTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTIKDDKIASKLSADDKKKIEDAIEEAIQWLEGNQLAEADEFEDKMKELEGLCNPIIARMYQGPGGEAGGAMDDDGPAAGSGSGAGPKIEEVD 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc214720g00002 650 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Stsc214720g00002 650 Gene3D - 546 620 IPR029048 -
Stsc214720g00002 650 Pfam Hsp70 protein 9 619 IPR013126 GO:0005524|GO:0140662
Stsc214720g00002 650 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Stsc214720g00002 650 FunFam Heat shock 70 kDa protein 197 264 - -
Stsc214720g00002 650 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc214720g00002 650 PRINTS 70kDa heat shock protein signature 337 353 - -
Stsc214720g00002 650 PRINTS 70kDa heat shock protein signature 396 415 - -
Stsc214720g00002 650 PRINTS 70kDa heat shock protein signature 36 48 - -
Stsc214720g00002 650 PRINTS 70kDa heat shock protein signature 58 66 - -
Stsc214720g00002 650 PRINTS 70kDa heat shock protein signature 146 166 - -
Stsc214720g00002 650 PRINTS 70kDa heat shock protein signature 209 219 - -
Stsc214720g00002 650 PRINTS 70kDa heat shock protein signature 369 389 - -
Stsc214720g00002 650 PRINTS 70kDa heat shock protein signature 478 494 - -
Stsc214720g00002 650 SUPERFAMILY Actin-like ATPase domain 196 388 IPR043129 -
Stsc214720g00002 650 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Stsc214720g00002 650 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 550 IPR029047 -
Stsc214720g00002 650 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Stsc214720g00002 650 Gene3D - 10 384 - -
Stsc214720g00002 650 MobiDBLite consensus disorder prediction 617 650 - -
Stsc214720g00002 650 FunFam Heat shock 70 kDa 235 318 - -
Stsc214720g00002 650 FunFam Heat shock 70 kDa protein 71 126 - -
Stsc214720g00002 650 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 544 624 IPR029048 -
Stsc214720g00002 650 FunFam Heat shock 70 kDa protein 540 650 - -
Stsc214720g00002 650 Coils Coil 519 546 - -
Stsc214720g00002 650 FunFam Heat shock 70 kDa 391 546 - -
Stsc214720g00002 650 Gene3D Actin; Chain A, domain 4 235 318 - -
Stsc214720g00002 650 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 545 IPR029047 -
Stsc214720g00002 650 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Stsc214720g00002 650 PANTHER HEAT SHOCK PROTEIN 70KDA 9 584 IPR013126 GO:0005524|GO:0140662
Stsc214720g00002 650 Gene3D - 71 126 - -
Stsc214720g00002 650 FunFam Heat shock protein 70 10 196 - -
Stsc214720g00002 650 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Stsc214720g00002 650 Gene3D - 192 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc214720g00002 Stsc-Chr214720 1161 3740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc214720g00002 1 650 Calmodulin-binding Proteins AT3G12580 92.178 0.0 1214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc214720g00002 K03283 - gmx:100816111 1196.8