Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc214605g00001 ATGATGACCAATAATAATCCTTTCTTGTTTCATAACCCAGACTTTTGGGATACAGATTCAGACATCACTTCCTCCTTCTGGTTGCAATCATTAGAAACCAAGAATGCTTGTGTTGTTTTTGATGACCCATTTCAAGATTCTTCTTCTTTATCTTTTGAGATGGTTGACTTTTCATCATCATCATCAGAATCAACAACAACAAGATCAAGCTTATTGAAGAAGGAGAAGAAGCATGAACAAGAAGAAGAACATGATGATGATAAGAAGGGAAGAAGAAGAAGTTACATAGGAGTGAGAAAAAGGCCATGGGGAAAATTCGCAGCCGAAATTCGAGACACAACAAGAAAAGGAGCGAGGGTTTGGCTTGGAACATTTGAAAGCGCTGAAGATGCTGCTTTGGCTTATGATCAAGCTGCATTCTCCATGAGAGGTTACTCTGCTGTTCTTAACTTTCCATTTCAAACTGTCAAAGATTCCTTGCAAGGAATCATCACCATGGAAGAATCTTTTGATTACAGCAAATCTAAATCCTTTTCTTCTTCTCCTTCTTGTTCACCTGCACTTGCACTCAAAGAGAGGAACTCCATCAAAAGAAAATTAGCATCCACATCATCATCAAAGGCCAACAAGAACAAGAACAAAAGAAAGGAATCATCAGAGGAATCTTCATCAACCACTACTACTAATAATAAGAGTGGTGATGTCATGGTTTTGGAGGATTTGGGAGTTGAATATCTTGAGCATCTACTAACCATTTCTGAGTCTCATCATCAAATCACAACAACAAGCCCTAATTACTTCTTCTGCAACAAAAATAATGAAGCTTTGTTTCGCTCGTCACCACCACCACCACAATGA 858 0.3834 MMTNNNPFLFHNPDFWDTDSDITSSFWLQSLETKNACVVFDDPFQDSSSLSFEMVDFSSSSSESTTTRSSLLKKEKKHEQEEEHDDDKKGRRRSYIGVRKRPWGKFAAEIRDTTRKGARVWLGTFESAEDAALAYDQAAFSMRGYSAVLNFPFQTVKDSLQGIITMEESFDYSKSKSFSSSPSCSPALALKERNSIKRKLASTSSSKANKNKNKRKESSEESSSTTTTNNKSGDVMVLEDLGVEYLEHLLTISESHHQITTTSPNYFFCNKNNEALFRSSPPPPQ 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc214605g00001 285 SMART rav1_2 94 158 IPR001471 GO:0003700|GO:0006355
Stsc214605g00001 285 SUPERFAMILY DNA-binding domain 95 153 IPR016177 GO:0003677
Stsc214605g00001 285 CDD AP2 95 152 IPR001471 GO:0003700|GO:0006355
Stsc214605g00001 285 Pfam AP2 domain 95 144 IPR001471 GO:0003700|GO:0006355
Stsc214605g00001 285 Gene3D AP2/ERF domain 94 154 IPR036955 GO:0003700|GO:0006355
Stsc214605g00001 285 ProSiteProfiles AP2/ERF domain profile. 94 152 IPR001471 GO:0003700|GO:0006355
Stsc214605g00001 285 FunFam Ethylene-responsive transcription factor 2 93 154 - -
Stsc214605g00001 285 MobiDBLite consensus disorder prediction 60 93 - -
Stsc214605g00001 285 MobiDBLite consensus disorder prediction 197 233 - -
Stsc214605g00001 285 MobiDBLite consensus disorder prediction 69 93 - -
Stsc214605g00001 285 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
Stsc214605g00001 285 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Stsc214605g00001 285 PANTHER DNA-BINDING DOMAIN 63 254 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc214605g00001 Stsc-Chr214605 819 2042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc214605g00001 93 254 AP2-EREBP Transcription Factor Family AT3G23240 48.765 2.27e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc214605g00001 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc214605g00001 K14516 - gmx:100812569 158.688