Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc214491g00002 ATGCTGGTCTGCCTCAATGTCATGCGAATAATCAATGAGCTTACAGCCTCAGCAATTGTATATGGCCTGGACGAGCTAGGGCTTAAGGCCACTGTAGGAAATACTCACCTTGGTGTAGAAGACTTTGATAACAGAATGGTGAATTACTTTGTAGAAGAGTTCAAAAAGAAGAACAAAGTAGATATTGGTGGGAACACAAAAGCCTTGAGAAGGATAAGAAGTGCATGCGAGAGGGCAAAAAGGACACTCTCATTTGCTTTTGATACTATTATTGAGCTTGATGCTTTATATCAAGGAATTGACCTTTATTCGTCACTCAGCCGTTCCAAGTTTGAGGAACTAAACATGGAACTCTTTAGAGAGTGTATGGAAACAGTAGATAAATGTCTCATTGATACTAAGAAAAACAGGTCTTGTATACATGATGTTGTCCTTATTGGTAGCTCTTCTAGGATTCCCAAAGTGCAGAAGCTATTGCAGGAATTCTTCAGAGATAAAGATCTTTGCAAGAGTATCAACCCAGATGAAGCTGTTGCTTATGGAACAACGGTTCAGGCTGCTTTATTGAGTGAAGACTTCAAGAAAGCACCGGAATTGGTTCTGTTGGATTTTACACCCCTCTCACTTGGTGTAGGGAGAATGAGAGACAAGATGAGTGTGGTGATTCCTCGGAATACTACCATACCTGCAAAGATGACAAAAAGATACATGACAGCTGAAGATTATGTTACCAGTTTTCAGATTGATGTTTATGAGGGTGAGAGAACAAGAGCCACAGATAACAACTTGCTTGTTGGTTTCATCTTTCTGGTTTTCCTTGTGTTCCGTATGGTTATTATTTCTATCGATGCTGATGAAATCTTAAATGTATCTTCATGA 879 0.3948 MLVCLNVMRIINELTASAIVYGLDELGLKATVGNTHLGVEDFDNRMVNYFVEEFKKKNKVDIGGNTKALRRIRSACERAKRTLSFAFDTIIELDALYQGIDLYSSLSRSKFEELNMELFRECMETVDKCLIDTKKNRSCIHDVVLIGSSSRIPKVQKLLQEFFRDKDLCKSINPDEAVAYGTTVQAALLSEDFKKAPELVLLDFTPLSLGVGRMRDKMSVVIPRNTTIPAKMTKRYMTAEDYVTSFQIDVYEGERTRATDNNLLVGFIFLVFLVFRMVIISIDADEILNVSS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc214491g00002 292 PANTHER HEAT SHOCK PROTEIN 70KDA 5 291 IPR013126 GO:0005524|GO:0140662
Stsc214491g00002 292 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 187 292 IPR029047 -
Stsc214491g00002 292 Gene3D - 170 186 - -
Stsc214491g00002 292 FunFam Heat shock 70 kDa 38 121 - -
Stsc214491g00002 292 SUPERFAMILY Actin-like ATPase domain 18 190 IPR043129 -
Stsc214491g00002 292 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 199 291 IPR029047 -
Stsc214491g00002 292 Gene3D Actin; Chain A, domain 4 39 121 - -
Stsc214491g00002 292 PRINTS 70kDa heat shock protein signature 198 217 - -
Stsc214491g00002 292 PRINTS 70kDa heat shock protein signature 140 156 - -
Stsc214491g00002 292 PRINTS 70kDa heat shock protein signature 172 192 - -
Stsc214491g00002 292 PRINTS 70kDa heat shock protein signature 273 289 - -
Stsc214491g00002 292 Gene3D - 28 169 - -
Stsc214491g00002 292 Pfam Hsp70 protein 27 267 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc214491g00002 Stsc-Chr214491 1918 2873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc214491g00002 1 292 Calmodulin-binding Proteins AT3G12580 54.545 9.91e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc214491g00002 K03283 - gmx:102667572 346.665