Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2143g00001 ATGAAGTTATTTGGTGACGTGAACCATGTTCCTAACAGCAATGAGCAAGGTAATGAATGCCATGATATCAAAGAGAAAGAGCAAGAGAATCAAGCAGTGGGAAATACAAGTTCAAGTGACAATCACAAGATCTCACGATTTCCATCATCATCATCATCATCATCATCATCATCATCATCGGAGATCTTAAGAAATTATGAAAACAGGTTCAGGGGAGAAAGATTAAGCTGTTCTGAAACTTGCATTGGTCCACAAAGGATGTCAACCGAGGAGATAATAAGAGTGGCTGGAGCTACATATGTTCGCTACTCTATGCATCCATATGAATCCAATTTCATGTGTTTGTCAAAAGAGGAAAACAAGGATGTTGAGCTTGTTCGGTTTCTTTTTGCTGCTGTTGAGAGATTAGGCTTTCGACAATTTCAAAGTGCCAGCTCGTTGCTCCTCCATTGCCAGAGCAATTCATCATGCGATGGTAGCTCAGTTCAGAGACTTGTCTTCCATTTCTCTCAAGCACTCACAGAAAGGCTCATCAAAGTAATTGGAGGAGGCGCGACGACGACCGGACTATCAAGGAATATTCCAGGAGACCGGATCGAAGAGATTCGAAGGGATTACAAATCCGCGCTTACATGCCATCAAAAGCTTCCCTTCAATCAAGTGACGCAGTTCATTAGTGTGCAAACCATAGTGGAGCATGTTGCATCACACACCAAGATACATGTCATAGATCTCGCGCTCGGATACGGATTGATGACAACAGTTCTCATGCAGGCTTTGGTTGAGCGCAAGGAAAAGCCGGTCCAGCTTCTCCAGATAACTGCCGTTGGATATGAAGGCCGCAGGAGGGTGCTGGATGAAGCAGGGAGGAGACTGCTCAGTTTTGCTGAGTCCATAAACTTAAGCATTATGTTTAAGACCATTATTGTTGAAGACATAGAAGAAATAGGTGAAGAACTTTTGGAGATTGAAGATGCTGAAGTTGTGGCTGTGTACTCTCCGTGTTTCTTGAATAGTTTGATGTCAAGTCCTGATTCCCTAAACCACTTGATGAGAATGATAAGGAAGACCAAACCAGCTATAATGGTTGTGGTTGAGGTGGAAGCAAGTCACAATTCTACTTCCTTTGTGAATCGATTCGTTGAATCATTGTTCTTCTACTCTGCATTATTTGACTCCACTGAAACATGCCTGAGTCAAAATGAGGAGAGTAGGATGAGACTTGAAGAAACAGTGTTATCCCGAGGCATACGAGATATTGTTGCATTTGATGACACAGAAAGGACAATTAGGAATGTGAAGATAAATGTTTGGAGAAGGGACATAAAAGAAGGGATGGCGATGATCACACAGAAGACGGCACAGACATGGAAGAAGGAAGGAAGGGAGGAAGATGATGATGACGATGATGAACGCACTGATGAAAAGGAAGGAGTACGTGGAACAAAATAA 1452 0.4263 MKLFGDVNHVPNSNEQGNECHDIKEKEQENQAVGNTSSSDNHKISRFPSSSSSSSSSSSSEILRNYENRFRGERLSCSETCIGPQRMSTEEIIRVAGATYVRYSMHPYESNFMCLSKEENKDVELVRFLFAAVERLGFRQFQSASSLLLHCQSNSSCDGSSVQRLVFHFSQALTERLIKVIGGGATTTGLSRNIPGDRIEEIRRDYKSALTCHQKLPFNQVTQFISVQTIVEHVASHTKIHVIDLALGYGLMTTVLMQALVERKEKPVQLLQITAVGYEGRRRVLDEAGRRLLSFAESINLSIMFKTIIVEDIEEIGEELLEIEDAEVVAVYSPCFLNSLMSSPDSLNHLMRMIRKTKPAIMVVVEVEASHNSTSFVNRFVESLFFYSALFDSTETCLSQNEESRMRLEETVLSRGIRDIVAFDDTERTIRNVKINVWRRDIKEGMAMITQKTAQTWKKEGREEDDDDDDERTDEKEGVRGTK 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2143g00001 483 MobiDBLite consensus disorder prediction 451 483 - -
Stsc2143g00001 483 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 90 446 IPR005202 -
Stsc2143g00001 483 MobiDBLite consensus disorder prediction 1 60 - -
Stsc2143g00001 483 ProSiteProfiles GRAS family profile. 116 483 IPR005202 -
Stsc2143g00001 483 MobiDBLite consensus disorder prediction 30 60 - -
Stsc2143g00001 483 Pfam GRAS domain family 126 444 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2143g00001 Stsc-Chr2143 1606 5165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2143g00001 123 439 GRAS Transcription Factor Family AT1G66350 30.938 1.30e-39 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc2143g00001 GRAS 4.7e-65 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2143g00001 - - aip:107615215 414.461