Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc214375g00001 ATGCAAAACCAGATAGTTCTATGGTTTTTGTCCTTTCTATTCTCATCTATATTAAGAAACTCCACTTCACTAGACAATATAACTCCTCTTCAATCCATCACTGATGGAGAGACATTAATTTCCAGTGGAGGAACCTTTGAACTTGGCTTCTACAGCCCTGGAAATTCAAAGGGCAGATACTTAGGCATATGGAACCATAACATATCCCCTAAGGTAGTGGTGTGGGTGGCTAACAGAGAAAAACCCCTCAACAACACCTCAGGAGTTCTAAAAGTCACCGGTAAAGGACTACTACTTGTCCTTGTTAATGGCAGTACCAACAGCAACATTGTGTGGTCCTCCAACACATCAAGAAAAGTGGAAGGCAAATGGAATAATCCTGTTGCACAGCTCTTGGAGTCAGGAAACCTTGTTGTCAAAGATGAACATAATGATGACCACTTTCTATGGCAGAGCTTTGATTATCCTCGTGACACACTCGTCCCCGGAATGAAGCTGGGATGGGATCTTGTGACAGGTCTAGAGAGGACTCTAACATCTTCCAAGAGTATTGATGATCCCGGCCGTGGAGACTACACTTTAAGAATTGACCTCCATGGTGATCCGCAAGTATTTCTAATGAATGGAAACACCATAACAATTAGAGTAGGGCCATGGAATGGACTAATGTTTTCAGGAGCTACACTTTATTTGCGCTATGCCCAGTATACATCTCAATTTGTTTTCAATGAAGAAGAGGTGTTTGTTAGGTTCGGACCACAAAATACATCAAAGTATATTAGATGTGTAGTTTACCCTTGGGGAGGTGTGCAGGTTTTGCATTGGTCTATACAAACCAGAGGCTGGGAGACATTTCTTTCTTTACCGGAAGCCGAATGCGACAAGTATGCTCTATGTGGTACAAACTCTGTTTGCAGGACTATTCCCACTCCGGTCTGTGAATGTTTTGAAGGATTTGTACCAAAATATCCAGGAAAATGGAAGGACTCTTATTGGTCTGATGGCTGTGTTAGGATCACTCCCTTAAGTTGCAGCAATGATGACTTCAAGAAGGTCACAGGGATAGTGCTGCCGGACACGGCTGCTTCTTGGTATAACAGGACCATGAACCTGCTGGAATGCAAGGAATTCTGTCTCAAGAATTGTTCTTGTACAGCTTATTCCAATTTGGATATCCGCGATGGAGGAAGTGGTTGCTTGGTCTGGTTTCATGATCTTATTGATATTAGACAAGGGACACAAGACTTCAATATTCGAATAAAGCGAGATGAAAAACAGTACAGTGGTTTCAGTCAGAGGAAGCTGGCAGGCATCATTGTTGGCTCTATGTTGTTCATCATGAGCATAATATTTGGACTACTATTATTTCGATGGAGAAAAAAACTTGAGGAGCCAGATATATTTTGGATGAAGCGACTTGATCACAAATGGGAAAAGGAGGACATGGACCTCCCAACATTTGATTTATCAACCATAGTTTATGCCACTAATCAGTTTTCTAGCAGTAACGAATTGGGAAAAGGTGGATATGGACAGGTTTATAAGCAAGAAGAGAAACTTTTGATTTATGAGCTCATGCCCAACAGGAGTTTGGACTACTTTATTTTTGATGATGCTAGAAGAAAATTGTTAGATTGGGCTAAGCGCTTTCACATTATTCGTGGCGCAGCTCGAGGCCTAGTTTATTTGCATCAGGACTCTAGGCTAAGAGTCATTCATAGAGATCTAAAAACCAGTAATATTCTTCTTGACGAAGACATGAATGCAAAAATATCAGACTTCGGCCTTGCTAGGACATTTGCATGTGATCAGACTGAAGACAAGACAAAAAGAGTGGTGGGAACTCATGGTTATATTTCACCCGAGTATGCAGTGCGTGGCTCTTTTTCAATGAAATCAGATGTGTTCGCCTTTGGTGTAATCGTGCTTGAGGTAGTCAGTGGGAGGAGGACTAGAGAGTTCTGTGTCCCAAACCAAAGTCTTAACCTTCTTGGATTTGCATGGGAGCTATGGAATGAGGAGAGGACTCTGGAGCTGGTGGATGAGTCCCTGCGCGATTCAGTGAATGAAGCTGAAGCATTGAGATGCATTCATATAGGGCTGCTATGTGTGCAAGAGAGACCAGAACATAGGCCAAACATGTCATCAGTAGTTCATATGTTGGATGACGATAAACCATTGCCTCGGCCAAGGTTGCCTGCATTTTATTCACGCCAACAGGATTGTACACTGATTGATGGTGAGGAAGTTCACTCAGCAAATGAGGTTACCATATCATTGTTAGGGGCAAGGTAG 2295 0.4235 MQNQIVLWFLSFLFSSILRNSTSLDNITPLQSITDGETLISSGGTFELGFYSPGNSKGRYLGIWNHNISPKVVVWVANREKPLNNTSGVLKVTGKGLLLVLVNGSTNSNIVWSSNTSRKVEGKWNNPVAQLLESGNLVVKDEHNDDHFLWQSFDYPRDTLVPGMKLGWDLVTGLERTLTSSKSIDDPGRGDYTLRIDLHGDPQVFLMNGNTITIRVGPWNGLMFSGATLYLRYAQYTSQFVFNEEEVFVRFGPQNTSKYIRCVVYPWGGVQVLHWSIQTRGWETFLSLPEAECDKYALCGTNSVCRTIPTPVCECFEGFVPKYPGKWKDSYWSDGCVRITPLSCSNDDFKKVTGIVLPDTAASWYNRTMNLLECKEFCLKNCSCTAYSNLDIRDGGSGCLVWFHDLIDIRQGTQDFNIRIKRDEKQYSGFSQRKLAGIIVGSMLFIMSIIFGLLLFRWRKKLEEPDIFWMKRLDHKWEKEDMDLPTFDLSTIVYATNQFSSSNELGKGGYGQVYKQEEKLLIYELMPNRSLDYFIFDDARRKLLDWAKRFHIIRGAARGLVYLHQDSRLRVIHRDLKTSNILLDEDMNAKISDFGLARTFACDQTEDKTKRVVGTHGYISPEYAVRGSFSMKSDVFAFGVIVLEVVSGRRTREFCVPNQSLNLLGFAWELWNEERTLELVDESLRDSVNEAEALRCIHIGLLCVQERPEHRPNMSSVVHMLDDDKPLPRPRLPAFYSRQQDCTLIDGEEVHSANEVTISLLGAR 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc214375g00001 764 PIRSF SRK 1 517 IPR024171 GO:0004674
Stsc214375g00001 764 PIRSF SRK 515 764 IPR024171 GO:0004674
Stsc214375g00001 764 CDD PAN_AP_plant 340 420 - -
Stsc214375g00001 764 ProSiteProfiles PAN/Apple domain profile. 344 425 IPR003609 -
Stsc214375g00001 764 CDD B_lectin 31 156 IPR001480 -
Stsc214375g00001 764 SMART blect_4 30 156 IPR001480 -
Stsc214375g00001 764 Pfam PAN-like domain 344 409 IPR003609 -
Stsc214375g00001 764 ProSiteProfiles Bulb-type lectin domain profile. 24 152 IPR001480 -
Stsc214375g00001 764 SMART serkin_6 499 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc214375g00001 764 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 708 - -
Stsc214375g00001 764 ProSiteProfiles Protein kinase domain profile. 387 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc214375g00001 764 Pfam Protein tyrosine and serine/threonine kinase 510 721 IPR001245 GO:0004672|GO:0006468
Stsc214375g00001 764 SUPERFAMILY Protein kinase-like (PK-like) 482 736 IPR011009 -
Stsc214375g00001 764 Gene3D Transferase(Phosphotransferase) domain 1 526 727 - -
Stsc214375g00001 764 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 526 728 - -
Stsc214375g00001 764 Pfam S-locus glycoprotein domain 215 322 IPR000858 GO:0048544
Stsc214375g00001 764 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 185 IPR036426 -
Stsc214375g00001 764 Gene3D Phosphorylase Kinase; domain 1 470 524 - -
Stsc214375g00001 764 SMART ntp_6 344 420 IPR003609 -
Stsc214375g00001 764 Gene3D - 20 153 IPR036426 -
Stsc214375g00001 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Stsc214375g00001 764 Pfam D-mannose binding lectin 73 182 IPR001480 -
Stsc214375g00001 764 Gene3D Hepatocyte Growth Factor 342 421 - -
Stsc214375g00001 764 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc214375g00001 Stsc-Chr214375 532 3595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc214375g00001 474 760 Receptor kinase-like Gene Family AT4G23150 43.787 2.61e-86 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc214375g00001 PK_Tyr_Ser-Thr 5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc214375g00001 - - aip:107611884 1269.99