Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc214308g00002 TTATATAGCCCTTTTTCTTTGTATGCAGCTCCTTTCAAGTTTGATGTTCCATCCCCGGATGATGTTGTTTATACCGGTCTACATTCTTCAAAAACAGGTTCAAAAGACAAAGATATGAATTCTAAAACTTCTCGGGTTTCGTCAAGCATCACAGTGAATAATGAACACTCTGTTCAATCAAATGTTGAAAGTTTAGAGAATTTAACATCACTAATGCAAAAGGGTAGGCAGGATAGGTCGGCTGAGAGCAAGCTTTCAAAGAAACCAGCAGTTCATTTGGAAACTAGTGAAAAAACTTCAAATGTGAATAACAAAAATGGTCCACTTGATATTCGCTCAAGCAAAGGAAAGGCTGGTAGTTCATCTGCAATGCTCGAAGTCAAAGGTAGTGATGAAATTAATTTCTCTTCTATCAAAGACGGACAATCTGAAAGTCTTTCCAGCAGTTTCAACAAAATAGCTGTGGATGCAAGATCTGGGAATTCAGATAATACTAATGCTAAGGGATCTCGTCCACAAGTTTCTTACAAACCTGAAAAATGGATGCTACCTCAACAAGCTGAAGATACGTTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGGAAATCAACACTCTCAGGTAGGTTACTTCACCTATTGGGACGAATTTCCCAGAAACAAATGCACAAATTTGAAAAGGAGGCCAAGATACAGGGCAAGGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGCTCTGAAGAAAGGGAAAGAGGAATAACTATGACAGTGGCTGTTGCTTATTTTGACACTAAGAAATATCATGTTGTGGTTCTCGACTCCCCCGGGCATAAAGATTTTGTACCGAACATGATTTCTGGAGCAACACAGGCCGATGCTGCAATTCTTGTCATAGATTCTTCACGTGGTTCATTTGAAGCTGGTATGGATAGTGGCAAGGGACAAACTAGGGAGCACGCACAACTTATCAGAAGCTTTGGTGTTGACCAGGTTATAGTCGCAGTAAATAAGATGGATACGGTAGGATATGCCCAAGATAGATTTGATTATATAAGACAGCAGTTGGGAATGTTTCTGCGCACTTGTGGTTTCAAAGATTCTTCTGTGTCATGGATTCCCATGAGTGCAATGGAAAATCAAAATTTAGTGGCACCCCCTTCTGAAGCTAGTTTAAAAAGCTGGTATAACGGACCATATTTGTTAGATGCAATTGACTCACTCCCACCGCCTACTAGAGAATACTCAAAACCTCTGATAATGCCAATATGTGATGTCATCAAATTACCTACGCTTGGACAGGTTTCTGCTTGTGGTAAACTTGAAGCAGGAGCTCTTCGTAGTGGATCAAAGGTCTTAGTTATGCCTGCAGCTGTCATGGGAACAGTACGGTCATTGGAGCGTGACTCTAATGCCTGCAGTGTTGCAAGGGCTGGAGATAATGTAGCTGTAACATTGCAAGGTGTTGATGGAAGTAATGTGATTGCAGGAGGTGTGTTATGCCATCCTGACTTTCCTGTTGCCGTTGCAAATCATTTGGAGTTAAAAGTGCTTGTTTTGGATGGTGCAAATCCCATATTGATGGGCTCTCAGTTGGAGTTTCATATACACCATGCAAAGGAGCCTGCAAGGGTTTCAAGAATATCATCAGTACTTGATCCGAAGACTGGTAAGGTGACCAAAAAGTCACCTCGCTGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTAACTTTGCAGGAGCCAGTTTGTGTAGTTGATGTCTCTATTTGTAAAGCTCTTGGAAGGGTATCCCTAAGATCATCAGGAAGAACAATCGCTGTTGGACTTGTGACAAGAATAATTGAAGAGCAACACTAG 1869 0.4136 LYSPFSLYAAPFKFDVPSPDDVVYTGLHSSKTGSKDKDMNSKTSRVSSSITVNNEHSVQSNVESLENLTSLMQKGRQDRSAESKLSKKPAVHLETSEKTSNVNNKNGPLDIRSSKGKAGSSSAMLEVKGSDEINFSSIKDGQSESLSSSFNKIAVDARSGNSDNTNAKGSRPQVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKFEKEAKIQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFVPNMISGATQADAAILVIDSSRGSFEAGMDSGKGQTREHAQLIRSFGVDQVIVAVNKMDTVGYAQDRFDYIRQQLGMFLRTCGFKDSSVSWIPMSAMENQNLVAPPSEASLKSWYNGPYLLDAIDSLPPPTREYSKPLIMPICDVIKLPTLGQVSACGKLEAGALRSGSKVLVMPAAVMGTVRSLERDSNACSVARAGDNVAVTLQGVDGSNVIAGGVLCHPDFPVAVANHLELKVLVLDGANPILMGSQLEFHIHHAKEPARVSRISSVLDPKTGKVTKKSPRCLTAKQSAVIEVTLQEPVCVVDVSICKALGRVSLRSSGRTIAVGLVTRIIEEQH 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc214308g00002 622 PANTHER TRANSLATION FACTOR 189 617 - -
Stsc214308g00002 622 MobiDBLite consensus disorder prediction 73 121 - -
Stsc214308g00002 622 Gene3D - 182 413 IPR027417 -
Stsc214308g00002 622 Gene3D Translation factors 419 508 - -
Stsc214308g00002 622 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 514 618 IPR009001 -
Stsc214308g00002 622 MobiDBLite consensus disorder prediction 95 120 - -
Stsc214308g00002 622 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 191 422 IPR000795 GO:0003924|GO:0005525
Stsc214308g00002 622 CDD HBS1_C_III 509 617 - -
Stsc214308g00002 622 Gene3D Translation factors 512 622 - -
Stsc214308g00002 622 CDD EF1_alpha 195 414 - -
Stsc214308g00002 622 FunFam elongation factor 1-alpha isoform X4 512 621 - -
Stsc214308g00002 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 436 IPR027417 -
Stsc214308g00002 622 Pfam Elongation factor Tu C-terminal domain 513 617 IPR004160 -
Stsc214308g00002 622 MobiDBLite consensus disorder prediction 26 54 - -
Stsc214308g00002 622 SUPERFAMILY Translation proteins 413 508 IPR009000 -
Stsc214308g00002 622 MobiDBLite consensus disorder prediction 77 94 - -
Stsc214308g00002 622 Pfam Elongation factor Tu GTP binding domain 194 410 IPR000795 GO:0003924|GO:0005525
Stsc214308g00002 622 FunFam Elongation factor 1 alpha-like protein 184 415 - -
Stsc214308g00002 622 PRINTS GTP-binding elongation factor signature 254 262 IPR000795 GO:0003924|GO:0005525
Stsc214308g00002 622 PRINTS GTP-binding elongation factor signature 290 301 IPR000795 GO:0003924|GO:0005525
Stsc214308g00002 622 PRINTS GTP-binding elongation factor signature 335 344 IPR000795 GO:0003924|GO:0005525
Stsc214308g00002 622 PRINTS GTP-binding elongation factor signature 274 284 IPR000795 GO:0003924|GO:0005525
Stsc214308g00002 622 PRINTS GTP-binding elongation factor signature 195 208 IPR000795 GO:0003924|GO:0005525
Stsc214308g00002 622 FunFam Translation elongation factor EF-1 418 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc214308g00002 Stsc-Chr214308 247 4058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc214308g00002 10 620 Eukaryotic Initiation Factors Gene Family AT5G10630 61.827 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc214308g00002 K14416 - gmx:100801724 975.311