Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc214308g00001 TTTAATACTAAAAGCCATTCCCATTTAAACATAGCTCCTTTCAAGTTTGATGTTCCATCCCCGGATGATGTTGTTTATACCGGTCTACATTCTTCAAAAACAGGTTCAAAAGACAAAGATATGAATTCTAAAACTTCTCGGGTTTCGTCAAGCATCACAGTGAATAATGAACACTCTGTTCAATCAAATGTTGAAAGTTTAGAGAATTTAACATCACTAATGCAAAAGGGTAGGCAGGATAGGTCGGCTGAGAGCAAGCTTTCAAAGAAACCAGCAGTTCATTTGGAAACTAGTGAAAAAACTTCAAATGTGAATAACAAAAATGGTCCACTTGATATTCGCTCAAGCAAAGGAAAGGCTGGTAGTTCATCTGCAATGCTCGAAGTCAAAGGTAGTGATGAAATTAATTTCTCTTCTATCAAAGACGGACAATCTGAAAGTCTTTCCAGCAGTTTCAACAAAATAGCTGTGGATGCAAGATCTGGGAATTCAGATAATACTAATGCTAAGGGATCTCGTCCACAAGTTTCTTACAAACCTGAAAAATGGATGCTACCTCAACAAGCTGAAGATACGTTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGGAAATCAACACTCTCAGGTAGGTTACTTCACCTATTGGGACGAATTTCCCAGAAACAAATGCACAAATTTGAAAAGGAGGCCAAGATACAGGGCAAGGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGCTCTGAAGAAAGGGAAAGAGGAATAACTATGACAGTGGCTGTTGCTTATTTTGACACTAAGAAATATCATGTTGTGGTTCTCGACTCCCCCGGGCATAAAGATTTTGTACCGAACATGATTTCTGGAGCAACACAGGCCGATGCTGCAATTCTTGTCATAGATTCTTCACGTGGTTCATTTGAAGCTGGTATGGATAGTGGCAAGGGACAAACTAGGGAGCACGCACAACTTATCAGAAGCTTTGGTGTTGACCAGGTTATAGTCGCAGTAAATAAGATGGATACGGTAGGATATGCCCAAGATAGATTTGATTATATAAGACAGCAGTTGGGAATGTTTCTGCGCACTTGTGGTTTCAAAGATTCTTCTGTGTCATGGATTCCCATGAGTGCAATGGAAAATCAAAATTTAGTGGCACCCCCTTCTGAAGCTAGTTTAAAAAGCTGGTATAACGGACCATATTTGTTAGATGCAATTGACTCACTCCCACCGCCTACTAGAGAATACTCAAAACCTCTGATAATGCCAATATGTGATGTCATCAAATTACCTACGCTTGGACAGGTTTCTGCTTGTGGTAAACTTGAAGCAGGAGCTCTTCGTAGTGGATCAAAGGTCTTAGTTATGCCTGCAGCTGTCATGGGAACAGTACGGTCATTGGAGCGTGACTCTAATGCCTGCAGTGTTGCAAGGGCTGGAGATAATGTAGCTGTAACATTGCAAGGTGTTGATGGAAGTAATGTGATTGCAGGAGGTGTGTTATGCCATCCTGACTTTCCTGTTGCCGTTGCAAATCATTTGGAGTTAAAAGTGCTTGTTTTGGATGGTGCAAATCCCATATTGATGGGCTCTCAGTTGGAGTTTCATATACACCATGCAAAGGAGCCTGCAAGGGTTTCAAGAATATCATCAGTACTTGATCCGAAGACTGGTAAGGTGACCAAAAAGTCACCTCGCTGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTAACTTTGCAGGAGCCAGTTTGTGTAGTTGATGTCTCTATTTGTAAAGCTCTTGGAAGGGTATCCCTAAGATCATCAGGAAGAACAATCGCTGTTGGACTTGTGACAAGAATAATTGAAGAGCAACACTAG 1875 0.4123 FNTKSHSHLNIAPFKFDVPSPDDVVYTGLHSSKTGSKDKDMNSKTSRVSSSITVNNEHSVQSNVESLENLTSLMQKGRQDRSAESKLSKKPAVHLETSEKTSNVNNKNGPLDIRSSKGKAGSSSAMLEVKGSDEINFSSIKDGQSESLSSSFNKIAVDARSGNSDNTNAKGSRPQVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKFEKEAKIQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFVPNMISGATQADAAILVIDSSRGSFEAGMDSGKGQTREHAQLIRSFGVDQVIVAVNKMDTVGYAQDRFDYIRQQLGMFLRTCGFKDSSVSWIPMSAMENQNLVAPPSEASLKSWYNGPYLLDAIDSLPPPTREYSKPLIMPICDVIKLPTLGQVSACGKLEAGALRSGSKVLVMPAAVMGTVRSLERDSNACSVARAGDNVAVTLQGVDGSNVIAGGVLCHPDFPVAVANHLELKVLVLDGANPILMGSQLEFHIHHAKEPARVSRISSVLDPKTGKVTKKSPRCLTAKQSAVIEVTLQEPVCVVDVSICKALGRVSLRSSGRTIAVGLVTRIIEEQH 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc214308g00001 624 CDD EF1_alpha 197 416 - -
Stsc214308g00001 624 Pfam Elongation factor Tu C-terminal domain 515 619 IPR004160 -
Stsc214308g00001 624 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 516 620 IPR009001 -
Stsc214308g00001 624 Gene3D - 184 415 IPR027417 -
Stsc214308g00001 624 MobiDBLite consensus disorder prediction 79 96 - -
Stsc214308g00001 624 PRINTS GTP-binding elongation factor signature 276 286 IPR000795 GO:0003924|GO:0005525
Stsc214308g00001 624 PRINTS GTP-binding elongation factor signature 292 303 IPR000795 GO:0003924|GO:0005525
Stsc214308g00001 624 PRINTS GTP-binding elongation factor signature 337 346 IPR000795 GO:0003924|GO:0005525
Stsc214308g00001 624 PRINTS GTP-binding elongation factor signature 197 210 IPR000795 GO:0003924|GO:0005525
Stsc214308g00001 624 PRINTS GTP-binding elongation factor signature 256 264 IPR000795 GO:0003924|GO:0005525
Stsc214308g00001 624 FunFam Translation elongation factor EF-1 420 510 - -
Stsc214308g00001 624 Gene3D Translation factors 514 624 - -
Stsc214308g00001 624 Gene3D Translation factors 421 510 - -
Stsc214308g00001 624 FunFam elongation factor 1-alpha isoform X4 514 623 - -
Stsc214308g00001 624 MobiDBLite consensus disorder prediction 75 123 - -
Stsc214308g00001 624 FunFam Elongation factor 1 alpha-like protein 186 417 - -
Stsc214308g00001 624 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 193 424 IPR000795 GO:0003924|GO:0005525
Stsc214308g00001 624 MobiDBLite consensus disorder prediction 97 122 - -
Stsc214308g00001 624 CDD HBS1_C_III 511 619 - -
Stsc214308g00001 624 PANTHER TRANSLATION FACTOR 191 619 - -
Stsc214308g00001 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 438 IPR027417 -
Stsc214308g00001 624 MobiDBLite consensus disorder prediction 29 51 - -
Stsc214308g00001 624 SUPERFAMILY Translation proteins 415 510 IPR009000 -
Stsc214308g00001 624 Pfam Elongation factor Tu GTP binding domain 196 412 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc214308g00001 Stsc-Chr214308 5 4058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc214308g00001 10 622 Eukaryotic Initiation Factors Gene Family AT5G10630 61.789 0.0 760