Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc214206g00001 ATGGATCCAAAAGTGAGCCGGTGTTCTAACAACTGGGCGAGGTCCTCTCCGGGGAGCGGATTGCAGACAAACATGTCATCGGATCCATCTGCTTTGTTTGGCATTCGGATTGAAGCGCCTTTCAAAGACTTCAACCAACCCTCTACTAACCAGTCTTTGCTTCTGGGGGAACGAAACAAGGATGTTAAGATTTCTGATATAGAAAACTGTCAACTGACTGACTCGTCATTGCAAACCGGTAAACCTCAAGAGTGGGATCCTAATGTTATGTTGAATAACCTTTCCTTTCTGGAAGACAAGATTCATCAGCTCCAGGATCTTGTTCATATGATTGATAATAAGAAGTGTCAACCTTTTGCGCAACCTGATGCGCTTGTGACACAGGAGCAGCAGCTCATCACAGCTGATCTTACATCAATTATTGTTCAACTGATCTCTACTGCCGGTAATCTTCTCCCGTCCGTTAGGCACACTCTTGCAAACACAAGTCCATTGATCAGTCAGCTTAGTCAGCTTCGCGGGCTTAACCTTCCTTTCGGATCAGGCCCCAGTGGTGGTATTCAGCCGCAAAATAATAATGTAAATAAAATGTTTGATCAGTCCACTCAGAATAATGTACCTAATAACTGTGAAATGGAGCAAAATAACAACATGGAAGAGCATGAAACAAAAGATGAAGAAGATGTGGAGGAGGGAGAGAACCTTCCGCCGGGTTCCTACGAGATTTTGCAGCTAGAGAAAGAAGAAATCCTTGCACCCCATACACATTTCTGTACGATTTGCGGGAAGGGGTTCAAGAGGGATGCGAATCTTCGCATGCATATGCGGGGACACGGGGATGAGTACAAAACACCAGCGGCTCTTGCAAAGCCGCATAAAGAAATCGGATCCGAACCAAAGCTCATCAAGAGGTATTCCTGTCCCTATGCCGGCTGCAAGCGAAATAAGGATCACAAGAAGTTCCAACCTCTAAAGACTATTTTGTGTGTCAAAAACCACTACAAGAGGACACACTGCGACAAAAGTTACACTTGTAGCAGATGCCATACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAGCACTGTGGGAAGGATAAATGGCTCTGTTCCTGTGGTACAACATTTTCGAGGAAGGACAAGCTTTTCGGACACATTGCTCTTTTCCAAGGCCATACACCGGCAATTCCTTTGGAAGAAACCAAAGCACCAGCCGTTCCGGCCGAACTCGACAGCAAAGATAACAACTGTGATAAGGTTGGAAGTATGAACTTCTGTTTCGGATCAAATCCTCCAAATGAAAGTGAAGTTCAAAACATCATGGATGTGAAGGGTAACATTGATGATCCAATTAATTATTTCTCATCATTGAACTTTGAAGGATGCAACTTTGGTGGGTTTAATGAATTCTCTCAGTCTCCATTTGAAGATTCAGATGCTTCTTTCTCATTCCTTATGTCTGGAACTTTTAACTATGCTCCTAAACCAGGAGGTGAATCAACTTGTGATAATCTGTAG 1527 0.4355 MDPKVSRCSNNWARSSPGSGLQTNMSSDPSALFGIRIEAPFKDFNQPSTNQSLLLGERNKDVKISDIENCQLTDSSLQTGKPQEWDPNVMLNNLSFLEDKIHQLQDLVHMIDNKKCQPFAQPDALVTQEQQLITADLTSIIVQLISTAGNLLPSVRHTLANTSPLISQLSQLRGLNLPFGSGPSGGIQPQNNNVNKMFDQSTQNNVPNNCEMEQNNNMEEHETKDEEDVEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKEIGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEETKAPAVPAELDSKDNNCDKVGSMNFCFGSNPPNESEVQNIMDVKGNIDDPINYFSSLNFEGCNFGGFNEFSQSPFEDSDASFSFLMSGTFNYAPKPGGESTCDNL 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc214206g00001 508 ProSitePatterns Zinc finger C2H2 type domain signature. 258 278 IPR013087 -
Stsc214206g00001 508 Gene3D Classic Zinc Finger 240 310 - -
Stsc214206g00001 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 283 IPR013087 -
Stsc214206g00001 508 MobiDBLite consensus disorder prediction 1 27 - -
Stsc214206g00001 508 SUPERFAMILY beta-beta-alpha zinc fingers 254 281 IPR036236 -
Stsc214206g00001 508 MobiDBLite consensus disorder prediction 8 27 - -
Stsc214206g00001 508 SMART c2h2final6 305 338 IPR013087 -
Stsc214206g00001 508 SMART c2h2final6 256 278 IPR013087 -
Stsc214206g00001 508 SMART c2h2final6 343 365 IPR013087 -
Stsc214206g00001 508 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 78 480 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc214206g00001 Stsc-Chr214206 1046 3653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc214206g00001 224 506 C2H2 Transcription Factor Family AT1G34370 70.486 1.75e-141 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc214206g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc214206g00001 - - gmx:100170687 791.186