Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc214058g00002 ATGTCTTCAAGATTTTGGACCCAGGGTGCGAGCGATTCTGAGGACGAAAGCAGTGACTATGATGAGGTTGATGAGACGACGGCTGCTGAGGTAGATACCACTACCAAACAGAGCAGGTATTTGACAACTGAGATGAGTGATAGTGATGACTCGGATAGCCAGCGGCGCGTTGTCCGGTCAGCAAAGGATAAGAGATTTGAAGAGATGGCTTCTACCGTTGATCAGATGAAGAATGCCATGAAGATCAATGATTGGGTGAGCTTGCAGGAGAGCTTTGACAAGATCAACAAGCAGCTCGAGAAGGTCATGCGTGTTACTGAGTCTGAGAAGGTCCCCAATCTCTACATCAAGGCCCTGGTGATGTTGGAGGACTTTTTGGCTCAGGCTTTGGCCAATAAGGATGCCAAAAAGAAGATGAGTAGTAGCAATGCCAAGGCTTTGAACTCGATGAAGCAGAAGCTGAAGAAGAATAATAAGCAGTATGAGGAACTGATTAACAAATGCAGGGAGAGCCCTGAGAGTGACGAGGAGAAAGAAGAGGAGGAATCCGAGGAAGAATATGAGAGTGATGGTGAGATTATTGAGCCAGATCAGCTCAAAGCAAGAGATGACATGAAATCAGATTCGGAAGTTTCTCACTATGAAGATGAAAAGGGTGATGCTGGTGAAGGACCCTGGGACCAAAAACTTAGCAAGAAAGACAGGCTTATGGATAGGCAATTCATGAAAGACCCTAGTGAGATCACTTGGGACACAGTCAACAAGAAATTCAAGGAGGTTGTGGCAGCAAGGGGCAGAAAAGGAACTGGAAGGTTTGAGCAGGTTGAGCAGCTTACTTTCCTTACAAAAGTTGCTAAAACACCTGCACAGAAGCTGGAGATCCTTTTTAGTGTGGTATCTGCCCAGTTTGACGTTAACCCTGGCCTAAGTGGTCACATGCCCATTAACGTTTGGAAAAAGTGTGTGAATAACATGCTGGTCATTCTTGACATTTTAGTGCAATACCCTAACATAGTTGTTGATGATGCTGTGGAGCCGGATGAGAATGAAACTCAGAAGGGTCCTGACCATAATGGACCGATTCGCATTTGGGGAAATTTGGTGGCGTTCTTGGAAAGAATAGATGCCGAGTTTTTCAAGAGTTTGCAGTGCATAGATCCGCATACCCGTGAGTATGTTGAGAGACTCAGGGATGAGCCAATGTTTCTTGTTCTTGCTCAGAATGTCCAGGAATACCTTGAAAGGGTTGGAGATTTCAAAGCTGCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTTGTTTACTACAAACCACAGGAGGTTTATGATGCGATGAGAAAATTGGCCGAGTTGGATGAAGATGGTGATAGTGAAGGGGCTGGTGAAGAGAAAGGGTTTGAGGATACAAGAATCCCGACTCCATTTATTGCTACTCCTGAGCTTGTGCCCCGCAAACCTACCTTCCCTGAGAACAGCAGGACTCTAATGGACATATTGGTGTCCCTGATATACAAGTATGGTGATGAGCGCACTAAAGCACGGGCAATGCTTTGTGACATATACCACCATGCTCTTCTTGATGAGTTCTCAATATCCCGTGATCTGCTGCTCATGAGCCACTTGCAAGACAGTGTTCAGCATATGGACATATCAACGCAGATACTGTTTAACAGGGCTATGGCACAGTTGGGCCTATGTGCTTTTCGGGTTGGGTTGATTTCTGAAGCACATGGCTGTTTATCCGAACTTTATTCAGGTGGAAGGGTGAAGGAGTTGCTTGCACAAGGTGTGTCACAGAGTCGTTATCATGAAAAGACACCAGAACAGGAAAGGTTGGAAAGGAGGCGTCAGATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAGGCAGTGCATCTTACAACTGCAATGCTGCTCGAAGTTCCCAATATGGCAGCCAATGTTCATGATGCAAAGCGCAAAGTCATTAGTAAGAATTTCCGCCGCCTACTTGAGGTCAGCGACAAGCAAACATTTACTGGTCCACCTGAAAATGTGAGAGACCATGTTATGGCTGCCACAAGGGCTCTCACCAAAGGAGACTTCAACAAGGCTTATGACATTATTGCATCTCTTGACGTTTGGAAATTTGTTAGAAATCGAGACACAGTTCTTGCAATGCTGAAAGATAAGATCAAGGAGGAGGCATTGAGGACGTATCTCTTTACCTTCTCCTCATCTTATGATTCTTTGAGTCTTGATCAACTCACAAAAATTTTTTATCTCTCTGTTCCTCATACTCACAGCATTGTTAGTAGGATGATGATCAATGAAGAGCTTCATGCAAGCTGGGATCAGCCAACTGGCTGCATTATTTTCCAGGAT 2364 0.4505 MSSRFWTQGASDSEDESSDYDEVDETTAAEVDTTTKQSRYLTTEMSDSDDSDSQRRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRESPESDEEKEEEESEEEYESDGEIIEPDQLKARDDMKSDSEVSHYEDEKGDAGEGPWDQKLSKKDRLMDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPINVWKKCVNNMLVILDILVQYPNIVVDDAVEPDENETQKGPDHNGPIRIWGNLVAFLERIDAEFFKSLQCIDPHTREYVERLRDEPMFLVLAQNVQEYLERVGDFKAASKVALRRVELVYYKPQEVYDAMRKLAELDEDGDSEGAGEEKGFEDTRIPTPFIATPELVPRKPTFPENSRTLMDILVSLIYKYGDERTKARAMLCDIYHHALLDEFSISRDLLLMSHLQDSVQHMDISTQILFNRAMAQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLTTAMLLEVPNMAANVHDAKRKVISKNFRRLLEVSDKQTFTGPPENVRDHVMAATRALTKGDFNKAYDIIASLDVWKFVRNRDTVLAMLKDKIKEEALRTYLFTFSSSYDSLSLDQLTKIFYLSVPHTHSIVSRMMINEELHASWDQPTGCIIFQD 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc214058g00002 788 MobiDBLite consensus disorder prediction 175 192 - -
Stsc214058g00002 788 Coils Coil 144 171 - -
Stsc214058g00002 788 MobiDBLite consensus disorder prediction 43 63 - -
Stsc214058g00002 788 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 46 651 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Stsc214058g00002 788 MobiDBLite consensus disorder prediction 14 28 - -
Stsc214058g00002 788 SUPERFAMILY "Winged helix" DNA-binding domain 715 788 IPR036390 -
Stsc214058g00002 788 Pfam PCI domain 659 787 IPR000717 -
Stsc214058g00002 788 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 788 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Stsc214058g00002 788 MobiDBLite consensus disorder prediction 134 232 - -
Stsc214058g00002 788 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 787 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Stsc214058g00002 788 ProSiteProfiles PCI domain profile. 619 788 IPR000717 -
Stsc214058g00002 788 MobiDBLite consensus disorder prediction 1 63 - -
Stsc214058g00002 788 MobiDBLite consensus disorder prediction 193 232 - -
Stsc214058g00002 788 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 720 788 IPR000717 -
Stsc214058g00002 788 MobiDBLite consensus disorder prediction 135 154 - -
Stsc214058g00002 788 MobiDBLite consensus disorder prediction 155 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc214058g00002 Stsc-Chr214058 1437 4315 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc214058g00002 1 788 Eukaryotic Initiation Factors Gene Family AT3G56150 71.161 0.0 1100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc214058g00002 K03252 - gmx:100781967 1295.41