Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213g00008 ATGGCTCTGCTGTGTGGTTCCGCATCGGTGACCTTCCCTTCATCTTCTTTCCCTCGTCACACTCACACCAATACCTCTTCCTCATTCGCTGGCTTACAATTTCCACTGCAAAACCTATCATCCTTATCATTATCTTCTTCTTCCTCTTCTTCTTCTTCCAACACCAAGCCAAGAACTCTCCGTATCCATTGTCAGCAGGAAGATTCTTCCCCCGTTCCCGTTCCCGTTCCCGTTCCGCCAGAACAAGATCCACGGTTCCTCTGCGTCGAACCCGAACCCCGATTCAAAGGCCCGGACATTTGGAACAAGACCTGGTATCCAAAAGCTGCTGATCATGTTAATACGGAGAAAACATGGTATGTTGTTGATGCTACAGACAAAGTTCTTGGTAGACTGGCATCGACAATCGCCATTCATATTCGAGGGAAAAATCTAGAAACCTATACTCCCAGTGTGGACATGGGTGCGTTTGTAATTGTGGTGAATGCTGAAAAGGTTGCTGTATCTGGGAAAAAGAGAACCCAAAAGCTTTACAGGAGGCACTCTGGCAGACCTGGTGGTATGACGGTGGAGACATTTGCTCAGCTGCAGAACAGAATTCCTGAAAGAATTATCGAACATGCTGTTCGTGGCATGCTTCCGAAAGGGAGGCTTGGGAGGAGGCTATTCACCCACCTGAAGGTTTATGAGGGCCCAGATCATCCTCATGCAGCGCAGAAGCCCATCGAACTGCCAATTCAGGATAAGAGAATACATTTACAGAGATAG 768 0.4779 MALLCGSASVTFPSSSFPRHTHTNTSSSFAGLQFPLQNLSSLSLSSSSSSSSSNTKPRTLRIHCQQEDSSPVPVPVPVPPEQDPRFLCVEPEPRFKGPDIWNKTWYPKAADHVNTEKTWYVVDATDKVLGRLASTIAIHIRGKNLETYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFAQLQNRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYEGPDHPHAAQKPIELPIQDKRIHLQR 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213g00008 255 Pfam Ribosomal protein L13 117 235 IPR005822 GO:0003735|GO:0005840|GO:0006412
Stsc213g00008 255 CDD Ribosomal_L13 119 232 IPR005822 GO:0003735|GO:0005840|GO:0006412
Stsc213g00008 255 NCBIfam 50S ribosomal protein L13 113 244 IPR005823 GO:0003735|GO:0005840|GO:0006412
Stsc213g00008 255 SUPERFAMILY Ribosomal protein L13 113 246 IPR036899 GO:0003735|GO:0005840|GO:0006412
Stsc213g00008 255 ProSitePatterns Ribosomal protein L13 signature. 209 231 IPR023563 GO:0003735|GO:0005840|GO:0006412
Stsc213g00008 255 Gene3D Ribosomal protein L13 108 252 IPR036899 GO:0003735|GO:0005840|GO:0006412
Stsc213g00008 255 FunFam 50S ribosomal protein L13 102 246 - -
Stsc213g00008 255 PANTHER RIBOSOMAL PROTEIN L13 105 250 IPR005822 GO:0003735|GO:0005840|GO:0006412
Stsc213g00008 255 Hamap 50S ribosomal protein L13 [rplM]. 119 245 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213g00008 Stsc-Chr213 38365 41429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213g00008 121 254 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 32.593 1.07e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213g00008 K02871 - gmx:100305981 381.333