Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213981g00001 ATGGATCTACACTTTGATATAGAGACTGAAGCTACTCACCATTCAATGGCAGAGCCAACTAAAATCTTCAACAATGCAAATCTCCCTGTACTTCTCAAGTTCTGTGATGTTGTTTATAAAACCAATGTTGAAAAAGAGGGATTCATTAACAAGAAGGTGGAAGAGAACACAATACTCAAAGGGGTTTCAGGAATTGTTAAACCAGGTGAAATTCTAGCCATGCTAGGCCCATCTGGAAGTGGCAAAACAACTCTCCTAACAGCATTAGGAGGCAGACTTGGAGGAAAACTCTATGGTAACATAACTTACAATGGCAAACCCTTCTCGAACGCGATGAAGCGTCTTACAGGATTTGTTACTCAGGATGATGTTCTGTATCCTCATCTAACTGTCACCGAGACTCTGATCTTCACCGCGCTTCTTAGATTGCCAAGTAGTAGGTTCACCAAAGAAGAGAAGATAATGCATGCCAAGAATGTGATTGCTCAACTAGGCTTAACTGAGTGCAAAGATAGCATAATTGGAGGGCCAATTCTGAGAGGGGTTTCTGGGGGAGAGAGGAAAAGGGTTAGCATTGGGCAAGAATTGTTGATGAATCCAAGCTTGTTGCTTTTGGATGAACCAACCTCCGGCTTAGATTCGACGACGGCGCAGAGAATTGTGTCAACTTTGTCTGAGCTTGCAATTGATGGAGAGAAAACTATTGTGATGACAATACACCAACCTTCTAGTAGGATATACTACATGTTTCACAAGGTCTTGCTCTTATCAGAAGGGAACCTTGTGTACTTTGGAATGGGTTCTGAAGCCATTAAATACTTCTCTAGCATCAACTTTGCTCCTCCTATGGCCATGAATCCTTCAGACTTCCTACTTGATCTTGCAAATGGTATTTACACAGGTCAACCGAACGAGGACCATGCCTTGAACAAGAAGAAATTGATCTCTTCCTACAAGGAATACTTTAGTGACACAATAGAACCAATGTTTGTTGAAAATTGTGAGTTTGATAAAGGAGAAGGTAGTAGATTTGAAGATGAAAAAAGCTTTGGGAATTGGCCTACCAATTGGTGGCAACAATTCCTTTTGCTGCTAACAAGAGATCTCAAAGAGAGAAGATATGAATCATTCTCTTACATTCTAATCTTTGAAGTTATTGCTGCTGCCATTATTACAGGGCTAGTATGGTACAAGTCTGATATTTCCCACTTGCAGGATCAGATTGGGCTTCTATTCAACATGATTAATTTTTGGTTTGCCTTCCCTCTCTACCGAGCAATATTCACCTTTCCCTTAGAAAGACCAATGTTGGAGAAAGAAAGATCCTCCGGTATGTACAGACTCTCCTCATACTTCTTGGCGAAGTCTGCGGCAGACCTTCCAATGGAGCTCGTCCTTCCCACTGCATACGTTATCATAACCTATTGGATGACAGGTCTGAAAGCGAATGCAGTTAACTTCTTGTGCACGCTATCTACCGTCTTACTCCACGTGTTAGTCGCGCAAGGGATTGCGCTCGCCATCGGCGCGATTATGATGGATATGAAATCTGTGACTACAATGGCTGCAGTGATCATGCTAATTTTCATGCTATCAGCTGGATACTTTGTTCAACATTTGCCGAAATTTATAGCGTGGTTGAAGTATATCTCTCCCAGTTACTATACATACCAGCTCTTGATAGGGTCTCAGTATAAATCTAGTGAGATATACCCATGTTCTAACAGTAACAATGGTGTGTGTTCAGTTGCAGAATTTTCTATGATAAAAACACAAACGGCTCTTGATATGAGAGATCAAGGCATGGCTGCATTGGCTCTAGTTATAATGCTAGTAGGTTATAGAATTGTGGCTTATATTGCTCTTTTGAGAATTGGAGTGACAAAGAACATGGTCTAG 1899 0.4123 MDLHFDIETEATHHSMAEPTKIFNNANLPVLLKFCDVVYKTNVEKEGFINKKVEENTILKGVSGIVKPGEILAMLGPSGSGKTTLLTALGGRLGGKLYGNITYNGKPFSNAMKRLTGFVTQDDVLYPHLTVTETLIFTALLRLPSSRFTKEEKIMHAKNVIAQLGLTECKDSIIGGPILRGVSGGERKRVSIGQELLMNPSLLLLDEPTSGLDSTTAQRIVSTLSELAIDGEKTIVMTIHQPSSRIYYMFHKVLLLSEGNLVYFGMGSEAIKYFSSINFAPPMAMNPSDFLLDLANGIYTGQPNEDHALNKKKLISSYKEYFSDTIEPMFVENCEFDKGEGSRFEDEKSFGNWPTNWWQQFLLLLTRDLKERRYESFSYILIFEVIAAAIITGLVWYKSDISHLQDQIGLLFNMINFWFAFPLYRAIFTFPLERPMLEKERSSGMYRLSSYFLAKSAADLPMELVLPTAYVIITYWMTGLKANAVNFLCTLSTVLLHVLVAQGIALAIGAIMMDMKSVTTMAAVIMLIFMLSAGYFVQHLPKFIAWLKYISPSYYTYQLLIGSQYKSSEIYPCSNSNNGVCSVAEFSMIKTQTALDMRDQGMAALALVIMLVGYRIVAYIALLRIGVTKNMV 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213981g00001 632 Pfam ABC transporter 59 210 IPR003439 GO:0005524
Stsc213981g00001 632 Pfam ABC-2 type transporter 359 565 IPR013525 GO:0016020|GO:0140359
Stsc213981g00001 632 Gene3D - 48 278 IPR027417 -
Stsc213981g00001 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 277 IPR027417 -
Stsc213981g00001 632 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 32 283 IPR003439 GO:0005524
Stsc213981g00001 632 FunFam ABC transporter G family member 22 48 277 - -
Stsc213981g00001 632 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 24 619 - -
Stsc213981g00001 632 SMART AAA_5 68 260 IPR003593 GO:0016887
Stsc213981g00001 632 Pfam ABC-2 type transporter 240 314 IPR043926 GO:0140359
Stsc213981g00001 632 ProSitePatterns ABC transporters family signature. 182 196 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213981g00001 Stsc-Chr213981 1227 3845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213981g00001 58 272 Calmodulin-binding Proteins AT2G36910 25.108 5.44e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213981g00001 K05681 - gmx:100812397 771.926