Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213975g00003 ATGTATGAAAATCAAGGTTCTTCTGAGGTCTCAAATTATGCAACAAGTAGTGGAATTTCTTCTGGGGATGTTGGTTATAGAGCTACAAAGTCAAAGTATATATATCTTTTGGGTAGCAATTCTGGGTTTCAATCATTTCCCTTCAAAATTGATCTCAATTTTGTTCGTATGGTGATGGCAGAGGTGATTGGAACATTTATTTTGATGTTCTGTGTAAGTGGAATAATAGCAACGACAAAATTCCAAAGTGGTGAAGTGGGGCTTCTAGAATATGCAGCCACAGCAGGATTAACAGTGGTTGTAATCATCTTCTCCATTGGACCAATTTCTTGTGCTCATGTCAACCCTGCTGTCACTATTGCCTTTGCAACAATTGGTCATCTTCCATGGTTCAAGGTTCCAATTTACATAATAGCGCAGATAGTAGGTTCTATATTGGCAACATTTATAGGTAGCCTTGTTTATGGCATAAAATCAGAAGCTATGATGACAAGGCCAATCCAGGGTTGCAACTCTGCATTCTGGGTTGAACTCATTGCAACCTTCATCATCATGTTCCTTGTTGCAGCTTTGACATCTGAGTATCAATCAATTGGGCATTTATCTGGCTTTGTTGCTGGAATTGCAATTGGTCTTGCTGTTCTTATCACAGGGCCTGTGTCAGGTGGATCAATGAACCCAGCAAGATCATTAGGGCCAGCAATTATTTCATGGAAATTCAAAGACATTTGGATTTACATTATAGCACCAAGTGCAGGAGCCATAGCTGGAGCTCAAACCCTTCGTTTTCTTCGCCTTAATAAGGATCAAAATTGCAACACCACTTTGGCCTCTCCATCCATCACTGATGGAGAAATGGAAATGGACCCATGA 873 0.4021 MYENQGSSEVSNYATSSGISSGDVGYRATKSKYIYLLGSNSGFQSFPFKIDLNFVRMVMAEVIGTFILMFCVSGIIATTKFQSGEVGLLEYAATAGLTVVVIIFSIGPISCAHVNPAVTIAFATIGHLPWFKVPIYIIAQIVGSILATFIGSLVYGIKSEAMMTRPIQGCNSAFWVELIATFIIMFLVAALTSEYQSIGHLSGFVAGIAIGLAVLITGPVSGGSMNPARSLGPAIISWKFKDIWIYIIAPSAGAIAGAQTLRFLRLNKDQNCNTTLASPSITDGEMEMDP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213975g00003 290 Pfam Major intrinsic protein 52 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc213975g00003 290 MobiDBLite consensus disorder prediction 1 22 - -
Stsc213975g00003 290 Gene3D Glycerol uptake facilitator protein. 43 276 IPR023271 -
Stsc213975g00003 290 ProSitePatterns MIP family signature. 113 121 IPR022357 -
Stsc213975g00003 290 PANTHER AQUAPORIN NIP2-1 47 269 IPR034294 -
Stsc213975g00003 290 PRINTS Major intrinsic protein family signature 56 75 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc213975g00003 290 PRINTS Major intrinsic protein family signature 132 151 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc213975g00003 290 PRINTS Major intrinsic protein family signature 176 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc213975g00003 290 PRINTS Major intrinsic protein family signature 95 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc213975g00003 290 PRINTS Major intrinsic protein family signature 244 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc213975g00003 290 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc213975g00003 290 SUPERFAMILY Aquaporin-like 51 268 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213975g00003 Stsc-Chr213975 541 3664 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213975g00003 30 268 Major Intrinsic Protein MIP AT4G10380 40.816 7.51e-55 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213975g00003 K09874 - gmx:100817660 361.303