Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213975g00001 ATGTATGAAAATCAAGGTTCTTCTGAGGTCTCAAATTATGCAACAAGTAGTGGAATTTCTTCTGGGGATGTTGGTTATAGAGCTACAAAGTCAAAGTATATATATCTTTTGGGTAGCAATTCTGGGTTTCAATCATTTCCCTTCAAAATTGATCTCAATTTTGTTCGTATGGTGATGGCAGAGGTGATTGGAACATTTATTTTGATGTTCTGTGTAAGTGGAATAATAGCAACGACAAAATTCCAAAGTGGTGAAGTGGGGCTTCTAGAATATGCAGCCACAGCAGGATTAACAGTGGTTGTAATCATCTTCTCCATTGGACCAATTTCTTGTGCTCATGTCAACCCTGCTGTCACTATTGCCTTTGCAACAATTGGTCATCTTCCATGGTTCAAGGTTCCAATTTACATAATAGCGCAGATAGTAGGTTCTATATTGGCAACATTTATAGGTAGCCTTGTTTATGGCATAAAATCAGAAGCTATGATGACAAGGCCAATCCAGGGTTGCAACTCTGCATTCTGGGTTGAACTCATTGCAACCTTCATCATCATGTTCCTTGTTGCAGCTTTGACATCTGAGTATCAATCAATTGGGCATTTATCTGGCTTTGTTGCTGGAATTGCAATTGGTCTTGCTGTTCTTATCACAGGGCCTGTGTCAGGTGGATCAATGAACCCAGCAAGATCATTAGGGCCAGCAATTATTTCATGGAAATTCAAAGACATTTGGATTTACATTATAGCACCAAGTGCAGGAGCCATAGCTGGAGCTCAAACCCTTCGTTTTCTTCGCCTTAATAAGGATCAAAATTGCAACACCACTTTGGCCTCTCCATCCATCACTGATGTTGGTCACCCTATACCCTATTCTTCAAGTTAG 882 0.4014 MYENQGSSEVSNYATSSGISSGDVGYRATKSKYIYLLGSNSGFQSFPFKIDLNFVRMVMAEVIGTFILMFCVSGIIATTKFQSGEVGLLEYAATAGLTVVVIIFSIGPISCAHVNPAVTIAFATIGHLPWFKVPIYIIAQIVGSILATFIGSLVYGIKSEAMMTRPIQGCNSAFWVELIATFIIMFLVAALTSEYQSIGHLSGFVAGIAIGLAVLITGPVSGGSMNPARSLGPAIISWKFKDIWIYIIAPSAGAIAGAQTLRFLRLNKDQNCNTTLASPSITDVGHPIPYSSS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213975g00001 293 Gene3D Glycerol uptake facilitator protein. 43 276 IPR023271 -
Stsc213975g00001 293 SUPERFAMILY Aquaporin-like 51 268 IPR023271 -
Stsc213975g00001 293 MobiDBLite consensus disorder prediction 1 22 - -
Stsc213975g00001 293 PRINTS Major intrinsic protein family signature 176 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc213975g00001 293 PRINTS Major intrinsic protein family signature 56 75 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc213975g00001 293 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc213975g00001 293 PRINTS Major intrinsic protein family signature 132 151 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc213975g00001 293 PRINTS Major intrinsic protein family signature 95 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc213975g00001 293 PRINTS Major intrinsic protein family signature 244 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc213975g00001 293 PANTHER AQUAPORIN NIP2-1 47 269 IPR034294 -
Stsc213975g00001 293 ProSitePatterns MIP family signature. 113 121 IPR022357 -
Stsc213975g00001 293 Pfam Major intrinsic protein 52 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213975g00001 Stsc-Chr213975 541 3664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213975g00001 30 288 Major Intrinsic Protein MIP AT4G10380 39.245 5.49e-55 178