Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213965g00001 ATGTCTTCAAGGGGAAGAAAAAAGGCAGCTACCCAACGCATGTTGCAACAACTTCGAACCGCCACTAATTCCAGTGCTATGAACAAAGCCTCTATTATTGTGGATGCCACCAAATACATAGAAGAGTTGAAGCAAAAGGTGGAAGGAATTAACTCAGAGCTAGGAACCGTTGAATCTTCATCATCAACCTCCCAGGATCAATTACCAATGGTGACGGTAGAAACCCTAGAAAGGAGTTTTCTGATTAATGTGTTTTCAGAAAGGAATTGCCCCGGTATGCTTGTAGCAATACTTGAAGCCTTTGAAGAACTGGGTCTTGATGTTCTTGACGCTAGGGTTTCTTGTGAAGACAATTTCCAGCTAGAAGCTGTGGGAGGAGAAGGTCAAGATCAGAACGAGAGCATCGATGCGCAAGTGGTCAAACAAGCAGTGTTGCAAGCAATCAATAACATGAATTAA 459 0.4292 MSSRGRKKAATQRMLQQLRTATNSSAMNKASIIVDATKYIEELKQKVEGINSELGTVESSSSTSQDQLPMVTVETLERSFLINVFSERNCPGMLVAILEAFEELGLDVLDARVSCEDNFQLEAVGGEGQDQNESIDAQVVKQAVLQAINNMN 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213965g00001 152 Coils Coil 33 60 - -
Stsc213965g00001 152 Gene3D - 4 73 IPR036638 GO:0046983
Stsc213965g00001 152 CDD ACT_UUR-ACR-like 91 148 - -
Stsc213965g00001 152 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213965g00001 Stsc-Chr213965 3827 6588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213965g00001 25 146 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 27.612 7.32e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213965g00001 - - ccaj:109816195 237.269