Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213933g00001 ACAACAACCATTGATGATGCACAAAAGAATAGCAGTGGAAGGTATGTGATATATGTGAAGGAAGGGATATACAATGAACAAGTAGAAATAAAGATAAATAATATCAAGCTCATCGAAGATGGCATTGGAAAAACCATAATTACTGGCAGGCAAAGTTTCGGGGGAGGCGTTACAACCTTCCGTTCAGCTTCTGTTG 196 0.3878 TTTIDDAQKNSSGRYVIYVKEGIYNEQVEIKINNIKLIEDGIGKTIITGRQSFGGGVTTFRSASV 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213933g00001 65 SUPERFAMILY Pectin lyase-like 4 64 IPR011050 -
Stsc213933g00001 65 PANTHER PECTINESTERASE 2 65 - -
Stsc213933g00001 65 Pfam Pectinesterase 3 65 IPR000070 GO:0030599|GO:0042545
Stsc213933g00001 65 ProSitePatterns Pectinesterase signature 1. 11 30 IPR018040 -
Stsc213933g00001 65 Gene3D - 1 65 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213933g00001 Stsc-Chr213933 5124 5321 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213933g00001 12 65 Carbohydrate Esterase AT2G45220 64.815 7.50e-18 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213933g00001 K01051 - gmx:100782892 95.9005