Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213925g00001 ATGACTGGTGCGGTTTACTACATATATGACACTTGCATAATGAAGAAAGAAAAACAAGCAATCATTGAAAAATTTCTTGAAGACTATAGAGCTCAAAAGCCAACCAGGTACTCTTATGCTGAAATCAAGAGAATTACCAATAACTTCGGCGACAAGTTAGGAGAGGGAGCCTATGGAACTGTCTTCAAAGGAAGCATCTCAAAAGAAATTACTGTTGCTGTGAAGATGCTGAATAATTCCCAGGGAAATGGGGAAGAGTTTGTCAATGAAGTTGGCATAATTGGTAGAATCCACCATGTCAACATTGTCCGGTTGGTTGGTTTTTGTGCTGATGGGTTTAGAAGAGCTCTTATCTATGAATTCTTGCCGAATTCTTCGCTGCAGAAGTTCATCAATTCGCCGGACAACAAGCAGAACTTTTTGGGCTGGAAGAAGTTGCTAGAAATTGCTTTGGGTGTGGCAAAAGGAATTGAGTATCTTCACCAAGGTTGCGATAAACGCATCCTCCATTTCGATATCAAACCTCAAAATGTGTTGCTAGACCACAACTTTTCTCCTAAAATTTGTGATTTCGGTCTAGCTAAATTATGTTCCAAGGATCAAAGTGTAGTGTCAATGACAGCTGCTAGAGGAACTTTAGGATACATTGCACCCGAAGTTTTCTCAAGAAACTTCGGAAACGTATCCTACAAGTCTGATGTGTATAGTTATGGAATGATGCTGCTCGAAACAATTGGAGGGAAGAAGATCACAGAGGACATAGAAGAAAACAGTAGCCATGTTTACTATCCAGAATGGATGCATAGTGTTTTAGAAGAGAGTGATGAATTGAGAATTCACATTGAAGATGAAGGGGATGCTAAAATTGCTAAGAAACTAGCAACAGTGGGACTTTGTTGCATTCAATGGCATGCAGTGGATCGACCATCAATGCAGACAGTGGTTCAAATGTTGGAGGGAGAGCAAGACACATTACCAATACCTCCTAATCCTTTTGCTTCCACAGAGACTTCAAGAAAATATGCTAAATTTGGTGTGGCTGCAAGACAAATTACCCCAGATTTAGAAGTGATCCAAGAGTTAGATTGA 1089 0.3994 MTGAVYYIYDTCIMKKEKQAIIEKFLEDYRAQKPTRYSYAEIKRITNNFGDKLGEGAYGTVFKGSISKEITVAVKMLNNSQGNGEEFVNEVGIIGRIHHVNIVRLVGFCADGFRRALIYEFLPNSSLQKFINSPDNKQNFLGWKKLLEIALGVAKGIEYLHQGCDKRILHFDIKPQNVLLDHNFSPKICDFGLAKLCSKDQSVVSMTAARGTLGYIAPEVFSRNFGNVSYKSDVYSYGMMLLETIGGKKITEDIEENSSHVYYPEWMHSVLEESDELRIHIEDEGDAKIAKKLATVGLCCIQWHAVDRPSMQTVVQMLEGEQDTLPIPPNPFASTETSRKYAKFGVAARQITPDLEVIQELD 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213925g00001 362 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc213925g00001 362 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Stsc213925g00001 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Stsc213925g00001 362 PANTHER RUST RESISTANCE KINASE LR10-RELATED 18 335 IPR045874 GO:0004672
Stsc213925g00001 362 Pfam Protein kinase domain 50 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc213925g00001 362 Gene3D Phosphorylase Kinase; domain 1 20 121 - -
Stsc213925g00001 362 ProSiteProfiles Protein kinase domain profile. 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc213925g00001 362 FunFam serine/threonine-protein kinase PBS1-like 14 121 - -
Stsc213925g00001 362 Gene3D Transferase(Phosphotransferase) domain 1 122 325 - -
Stsc213925g00001 362 SUPERFAMILY Protein kinase-like (PK-like) 30 319 IPR011009 -
Stsc213925g00001 362 FunFam PR5-like receptor kinase 122 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213925g00001 Stsc-Chr213925 4507 5648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213925g00001 12 331 Receptor kinase-like Gene Family AT1G66910 49.701 1.44e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc213925g00001 Pkinase 6.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213925g00001 - - lang:109328752 601.282