Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213914g00001 ATGGAGTTTTGGGGTACTGAGGTTAAGGTTGGTGAGGTTGTTAGAGTAGAGAACGAGGACTCTGATGTCTGCATACACCTTTCTCAGGTTGCTCTTGGTGAGTCCAAGAAGGACAAACCCAGTGAGCCTGTGGTTGTTTATTTGAAAGTTGGAGAACAGAAGTTTGTTCTTGGTACTCTTAACAAGGACAAGTTTCCTCAGATTGCTCTTGATTTGGTTGTTGAGAAGGAGTTTGAGCTTTTCCACAACTCCAAGAATGCCAGTGTCCACTTTACTGGATACAAGACATATGTTGCTGATGATGAGGAGGATGATTTTTCAGATGATAGTAGTGATGAGGATCTTCCATTACCAGTTGTGGAAAATGGAAAACCTGAAGTAAAAGCTGCGGAAGTAAAGGTTTCTCAATCTAAAAAACCTGATGGCCAGGCTGGTCCATCTAAACAAGTAAAAGTTATTGAACCGAAGAAAGAAGAGGATTCAGATGATGAATCTGATGAGGATGATGAAACCGACAGTTCAGATGAGGAGATGGTGGATGGCGAGAGTGATGAGGAGGGTGAAAGTGATGATGATGAAGACGAGGAAGATACCCCACCTAAGAAGGTGGACCAAGGAAAGAAGAGGCCAAATGAATCTGCGGTAAAAACTCCTGTTTCTAACAAGAAAGCAAAGAATGCTACCCCTGAAAAGACCGATGCTAAGAAAGGTGGCCATACAGCAACTCCTCACCCAGCAAAGAAAGGAGGAAAGACTCCAAACAGTGATGGCAAGGACACTCCCAAGTCTGGTGGACAATTCCTCTGCAAAAGTTGCAACAAGAACTTCAATTCTGAAACTGGTCTCCAACAACATAGCAAGGCTAAGCATGGTCAGTGA 879 0.4346 MEFWGTEVKVGEVVRVENEDSDVCIHLSQVALGESKKDKPSEPVVVYLKVGEQKFVLGTLNKDKFPQIALDLVVEKEFELFHNSKNASVHFTGYKTYVADDEEDDFSDDSSDEDLPLPVVENGKPEVKAAEVKVSQSKKPDGQAGPSKQVKVIEPKKEEDSDDESDEDDETDSSDEEMVDGESDEEGESDDDEDEEDTPPKKVDQGKKRPNESAVKTPVSNKKAKNATPEKTDAKKGGHTATPHPAKKGGKTPNSDGKDTPKSGGQFLCKSCNKNFNSETGLQQHSKAKHGQ 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213914g00001 292 ProSitePatterns Zinc finger C2H2 type domain signature. 269 290 IPR013087 -
Stsc213914g00001 292 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Stsc213914g00001 292 Gene3D Nucleoplasmin core domain 1 101 - -
Stsc213914g00001 292 MobiDBLite consensus disorder prediction 226 240 - -
Stsc213914g00001 292 MobiDBLite consensus disorder prediction 256 292 - -
Stsc213914g00001 292 MobiDBLite consensus disorder prediction 159 198 - -
Stsc213914g00001 292 SUPERFAMILY beta-beta-alpha zinc fingers 261 289 IPR036236 -
Stsc213914g00001 292 Gene3D Classic Zinc Finger 254 292 - -
Stsc213914g00001 292 FunFam Histone deacetylase HDT1 1 100 - -
Stsc213914g00001 292 MobiDBLite consensus disorder prediction 102 292 - -
Stsc213914g00001 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 267 292 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213914g00001 Stsc-Chr213914 384 2886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213914g00001 1 109 C2H2 Transcription Factor Family AT5G03740 46.789 8.55e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc213914g00001 NPL 1.2e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213914g00001 - - gmx:100792094 333.954