Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213904g00001 ATGAGCACACGGTCAGTTAGGGGGAATGTAAAATACAAACGGAGGAAGACAGGTTTGGAAATTGACCTTAATCAGGAGCCTGGTGGTGAGAATCGTGAGCTGGAAGGACCTTCAACTCAGGTGGAACCCCAACAAGTTCAAGCTGCCCAGCAACAGCAGGCTGTAGAGATGCCACAGCCAGCACAGCCTGCAACAATTGATGTGGAGGCCATTGTTGATGATGATGTTGTTGAATCTAGCCCCAGGGCTTTCGCTGAGGCTAAAAACAATGCAAGAAACAATGCGAGAAGAAATCGTCAGAGGACTATAGTTGATGTGGATTTAGAAGATCAGAATAGGATAACCAACAATAGCCGCAACAAACGCAGAAGAGTGTCCCCAAGCCAAACAATTATTAATTGTGATCTTTACATTAACTTGGAAAGCAGTAGCAGTGCTACGAAGGAACCTGTTGAAAAGGCACCTGAACCCCCAAAGGAGCCTGTCTTTAGCTGTCCAATATGCATGGGCCCTCTGGTTGAAGAGATGTCAACAAGGTGTGGTCATATATTTTGTAAGAGTTGTATCAAAGCTGCGATAAGCGCTCAGAATAAATGCCCTACATGTAGAAAAAGGGTTACTGTGAAGGAGCTTATAAGGTCTTTTATCTTTGGTGACAATATGGGGCCAGAGGCCGCTTATGACCCATTCTTGACTCAAGGGATTTATATTGGTTTAAGTGGGCGGCGTAACTCCCTCACGGAGCTACGCCGCCCACCGTCGCCGCCGCTCATCAAGGAGGAAGCCTCACCGATCGTCACCACCAACACTGATCCTTCACCGTCGCCTGTTCCGCCGAGCCATCTTCGCCTCTGTTCCGCCGTCCATCGTCGCCTCTGTTCCGGTTTTTTTTTTTTTTTTTTCCATCGCCTCGCCGCTCATCAAGGAGGAAGTAACACCGATCATCACCACCAACACAGATCGTCCACCGTCGCCTCTGTTTCGCCGTGCAATCTTCACCTCTGTTACGCCGTTCACCCTTGCCTCTGTTCTCCCATCCTTTCTCGTCGCTGCCTCCAGCGTTGCCGCACCACAGGCTCCCTCACCGAACCACACCACCGCCATCGCCGTTCAGCCCACACTCCGTTCGTCGTCGTCATCGGAGGCCGATCTTCCACATCCTTAGCCTCGTCAACACTCACAAGCTTCCCCTCAACACCGGATCTGTACGCGTCTGATCTCCTCCACCACCGTTGA 1236 0.5065 MSTRSVRGNVKYKRRKTGLEIDLNQEPGGENRELEGPSTQVEPQQVQAAQQQQAVEMPQPAQPATIDVEAIVDDDVVESSPRAFAEAKNNARNNARRNRQRTIVDVDLEDQNRITNNSRNKRRRVSPSQTIINCDLYINLESSSSATKEPVEKAPEPPKEPVFSCPICMGPLVEEMSTRCGHIFCKSCIKAAISAQNKCPTCRKRVTVKELIRSFIFGDNMGPEAAYDPFLTQGIYIGLSGRRNSLTELRRPPSPPLIKEEASPIVTTNTDPSPSPVPPSHLRLCSAVHRRLCSGFFFFFFHRLAAHQGGSNTDHHHQHRSSTVASVSPCNLHLCYAVHPCLCSPILSRRCLQRCRTTGSLTEPHHRHRRSAHTPFVVVIGGRSSTSLASSTLTSFPSTPDLYASDLLHHR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213904g00001 411 ProSiteProfiles Zinc finger RING-type profile. 165 203 IPR001841 -
Stsc213904g00001 411 SMART ring_2 165 202 IPR001841 -
Stsc213904g00001 411 MobiDBLite consensus disorder prediction 13 29 - -
Stsc213904g00001 411 PANTHER ELFLESS, ISOFORM B 7 216 - -
Stsc213904g00001 411 Pfam Zinc finger, C3HC4 type (RING finger) 165 202 - -
Stsc213904g00001 411 ProSitePatterns Zinc finger RING-type signature. 180 189 IPR017907 -
Stsc213904g00001 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 224 IPR013083 -
Stsc213904g00001 411 SUPERFAMILY RING/U-box 164 209 - -
Stsc213904g00001 411 MobiDBLite consensus disorder prediction 1 60 - -
Stsc213904g00001 411 MobiDBLite consensus disorder prediction 37 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213904g00001 Stsc-Chr213904 1140 5163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213904g00001 1 216 C3H Transcription Factor Family AT5G48655 47.005 3.33e-43 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213904g00001 K22651 - qsa:O6P43_016885 239.965