Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213902g00001 ATGGCCCTTAAGGTCACCATGGAGCAAGCCATTAGAGCCCACAAACTAGTGTCAACCATGGAACTAAACAACAACAAAAAAGCCAAGATGGCTTGGGAAGATTGTTTGGAGCTCTATGAGGACACTATTTATCAGCTGAACCGTTCCATCACCACAAAGAACCTAAACGACAAGTTAACATGGCAAAGTGCTTCCATTGCAAACCACCAAACATGCCAAAACGGTTTCATTCAATTCAACCTCAACTCTCACCTAAACTACTTCCCAACCATGATGTCCAACTTCTCCAAATTGCTCAGCAACTCCTTGTCCATCACCAAGGCCGTCTCCATGTTAGAACCAAACCAAGAACTCAAAGGAAGAAGAAGGTTATTGCTTTCATCATCATCATCACATGGTTTCCCTGAATGGTTATCGGTGTCGGATAGGAGGCTTCTTCAGGCCGCAACACCACCGAAGGCTGACGTGTTGGTGGCGCAAGACGGGAGCGGGAGCTACAAGACGATAACGGAAGGAGTGGCCGCGGCGGCTAGGATTGGCGGAGGAAGGAGGGTTGTTGTGCACGTGAAAGCAGGCGTTTACAGAGAGAATGTTGTTATCAAGAAAACAGTGAAGAATATAATGATTGTGGGAGATGGAATTGACGCAACGGTTGTCACCGGAAACGGCAACGCACAAGATGGATCCACCACTTTCCGATCAGCAACTTTTGGGGTTTCCGGTGATGGGTTCATAGCGCGGGACATAACCTTTGAGAACACCGCCGGTCCACAGAAGCACCAAGCGAACTGCAACATCTACGTCCGGAGACCCATGGGCAACCAGCAGAACACCGTCACCGCCCAAGGGAGAACCGATCCCAACGAGAACACCGGCATCATCATCCACAACTGCCGGATAACTGCCGCCGGGGACATGAGATCCGTTCAGGGCTCCTTCAAGACCTTCCTTGGTCGTCCATGGCAGAAGTACTCAAGAACGGTGGTCATGAAGAGCGCCCTTGATGGCCTGATTAACCCCGCCGGTTGGGCTCCTTGGAGTGGAAGCTTTGCTCTCAGCACACTCTATTACGGTGAGTACATGAACACCGGTCCCGGTGCTAACACTGCCGGTAGGGTTCACTGGCCTGGGTTTCATGTTATTAGAGATCCCTCTGAAGCTGTCAAATTTTCTGTTGGTGATTTCTTGGCTGGTGGATCATGGATTCCTGGTAGTGGTGTGCCCTTTGATGCAGGTTTGTGA 1242 0.5032 MALKVTMEQAIRAHKLVSTMELNNNKKAKMAWEDCLELYEDTIYQLNRSITTKNLNDKLTWQSASIANHQTCQNGFIQFNLNSHLNYFPTMMSNFSKLLSNSLSITKAVSMLEPNQELKGRRRLLLSSSSSHGFPEWLSVSDRRLLQAATPPKADVLVAQDGSGSYKTITEGVAAAARIGGGRRVVVHVKAGVYRENVVIKKTVKNIMIVGDGIDATVVTGNGNAQDGSTTFRSATFGVSGDGFIARDITFENTAGPQKHQANCNIYVRRPMGNQQNTVTAQGRTDPNENTGIIIHNCRITAAGDMRSVQGSFKTFLGRPWQKYSRTVVMKSALDGLINPAGWAPWSGSFALSTLYYGEYMNTGPGANTAGRVHWPGFHVIRDPSEAVKFSVGDFLAGGSWIPGSGVPFDAGL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213902g00001 413 PANTHER PECTINESTERASE 1 262 - -
Stsc213902g00001 413 ProSitePatterns Pectinesterase signature 1. 181 200 IPR018040 -
Stsc213902g00001 413 Gene3D - 263 413 IPR012334 -
Stsc213902g00001 413 Gene3D - 150 262 IPR012334 -
Stsc213902g00001 413 SUPERFAMILY Pectin lyase-like 149 412 IPR011050 -
Stsc213902g00001 413 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1 108 IPR035513 -
Stsc213902g00001 413 CDD PMEI-like_3 1 110 - -
Stsc213902g00001 413 SMART PMEI_2 1 105 IPR006501 GO:0004857
Stsc213902g00001 413 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 109 IPR035513 -
Stsc213902g00001 413 Pfam Pectinesterase 263 398 IPR000070 GO:0030599|GO:0042545
Stsc213902g00001 413 Pfam Pectinesterase 155 262 IPR000070 GO:0030599|GO:0042545
Stsc213902g00001 413 Pfam Plant invertase/pectin methylesterase inhibitor 1 105 IPR006501 GO:0004857
Stsc213902g00001 413 NCBIfam pectinesterase inhibitor domain 1 108 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213902g00001 Stsc-Chr213902 2688 4849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213902g00001 1 413 Carbohydrate Esterase AT1G23200 45.455 4.31e-137 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213902g00001 - - gmx:100816802 580.096