Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213869g00003 ATGCCATCACTAATCTTGCTCATGAAAACAGCAGCATTAAAACTCGTGTCAGGTGGAATTCCACCACTTGTGAATTTGCTTGAATTTGCAGATCCAAAAGTACAAAGAGCAGCTGCTGGTGCACTGCGAACCCTGGCTTTCAAAAATGACGAAAATAAAAATCAGATCGTTGAATGCAATGCTCTTCCAACTCTGATTCTAATGCTTCGCTCTGAAGATATAGCTATTCATTATGAAGCGGTTGCTGTGATTGGAAATCTGGTACACTCCTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGGGCTTTACAGCCGGTTATTGGATTACTTAGCTCGTGCTGCTCTGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGATTGTAAGGTTCACATTGTACAGAGAGGTGCTGTACAGCCTCTGATAGAGATGCTTCAATCTCCAGATGTACAACTCCAAGAAATGTCTGCCTTTGCATTAGGGAGATTAGCCCAGGACACACATAACCAAGCTGGCATTGCACATAATGGTGGCTTAGTGCCATTGCTCAAGCTTCTTGATTCCAAAAATGGGTCTTTGCAACATAATGTTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTATCCGATTTTATTAGGGTTGATGGAGTTCAGAGGTTGCAGGAAGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAGGAGAAAATCCATGGCCGTGTGCTGAAGCATTTGCTATATCTTATGCGAGTTTCAGAAAAGGGTTTGCAAAGGCGTGTTGCTTTGGCTTTTGCACATCTTTGTTCAGCAGATGATCAAAGAGGGATTTTTATAGAACACCATGGTCTCGAGTTGCTTATTGGGCTTCTTGGCTCATCTGGCTCTAAGCAGCAACTTGATGGTGCTGTAGCTTTATGCAAGTTAGCCAACAAAGCCTCAACTTTGTCTCCTGTGGATGCTGCTCCCCCTTCTCCAACACCACAGGTCTATTTAGGGGAGAAGTTTGTAAACAACCCTACGTTGTCAGACGTTACATTTTTGGTTGAAGGCAAACGGTTTTATGCTCACAGAATATGTCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAAGGATATTGAGATTCCAAATATTAGATGGGAAATTTTTGAGCTGATGATGAGATTTATATATACTGGATCAATAGAAATCTCGTTGGATATAGCTCAAGACCTTCTCCGAGTAGCTGATCAATATCTATTAGAAGGACTTAAGAGGCTCTGTGAATACACAATTGCAAAGGATATATCACTGGAGAACGTGTCAAGTATGTATGAACTTTCAGAAGCTTTTAATGCAATATCATTGAGGCACTCATGCATCCTTTTTATATTGGAGCAATTTGACAAATTGATTGCAATGCCTGGGCACTCTCTTCTGATTCAGTATATAATACCAGAGATTCGTAATTACTTCATTCAAGTTCTTACAAAGACCAACTCCCGTAAAATTCGACTGTAG 1587 0.4077 MPSLILLMKTAALKLVSGGIPPLVNLLEFADPKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDIAIHYEAVAVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSPDVQLQEMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNVAFALYGLADNEDNVSDFIRVDGVQRLQEGEFIVQATKDCVAKTLKRLEEKIHGRVLKHLLYLMRVSEKGLQRRVALAFAHLCSADDQRGIFIEHHGLELLIGLLGSSGSKQQLDGAVALCKLANKASTLSPVDAAPPSPTPQVYLGEKFVNNPTLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDAKDIEIPNIRWEIFELMMRFIYTGSIEISLDIAQDLLRVADQYLLEGLKRLCEYTIAKDISLENVSSMYELSEAFNAISLRHSCILFILEQFDKLIAMPGHSLLIQYIIPEIRNYFIQVLTKTNSRKIRL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213869g00003 528 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 16 522 IPR044282 -
Stsc213869g00003 528 Pfam Armadillo/beta-catenin-like repeat 17 46 IPR000225 GO:0005515
Stsc213869g00003 528 Pfam Armadillo/beta-catenin-like repeat 133 172 IPR000225 GO:0005515
Stsc213869g00003 528 Pfam Armadillo/beta-catenin-like repeat 49 88 IPR000225 GO:0005515
Stsc213869g00003 528 Gene3D - 118 235 IPR011989 -
Stsc213869g00003 528 SMART BTB_4 361 458 IPR000210 GO:0005515
Stsc213869g00003 528 Gene3D - 8 117 IPR011989 -
Stsc213869g00003 528 SUPERFAMILY POZ domain 352 456 IPR011333 -
Stsc213869g00003 528 SUPERFAMILY ARM repeat 19 329 IPR016024 -
Stsc213869g00003 528 ProSiteProfiles BTB domain profile. 361 428 IPR000210 GO:0005515
Stsc213869g00003 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 186 IPR000225 GO:0005515
Stsc213869g00003 528 CDD BTB_POZ_ARIA_plant 348 463 - -
Stsc213869g00003 528 Gene3D Potassium Channel Kv1.1; Chain A 344 487 IPR011333 -
Stsc213869g00003 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 18 53 IPR000225 GO:0005515
Stsc213869g00003 528 SMART arm_5 133 173 IPR000225 GO:0005515
Stsc213869g00003 528 SMART arm_5 7 47 IPR000225 GO:0005515
Stsc213869g00003 528 SMART arm_5 289 329 IPR000225 GO:0005515
Stsc213869g00003 528 SMART arm_5 174 214 IPR000225 GO:0005515
Stsc213869g00003 528 SMART arm_5 49 89 IPR000225 GO:0005515
Stsc213869g00003 528 SMART arm_5 91 131 IPR000225 GO:0005515
Stsc213869g00003 528 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 60 102 IPR000225 GO:0005515
Stsc213869g00003 528 Pfam BTB/POZ domain 354 455 IPR000210 GO:0005515
Stsc213869g00003 528 Gene3D - 236 343 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213869g00003 Stsc-Chr213869 572 6954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213869g00003 27 314 U-box Gene Family AT3G46510 26.389 1.42e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc213869g00003 BTB 6.3e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213869g00003 - - gmx:100784348 887.1