Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213869g00002 ATGGAAGGTGGAATTCCACCACTTGTGAATTTGCTTGAATTTGCAGATCCAAAAGTACAAAGAGCAGCTGCTGGTGCACTGCGAACCCTGGCTTTCAAAAATGACGAAAATAAAAATCAGATCGTTGAATGCAATGCTCTTCCAACTCTGATTCTAATGCTTCGCTCTGAAGATATAGCTATTCATTATGAAGCGGTTGCTGTGATTGGAAATCTGGTACACTCCTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGGGCTTTACAGCCGGTTATTGGATTACTTAGCTCGTGCTGCTCTGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGATTGTAAGGTTCACATTGTACAGAGAGGTGCTGTACAGCCTCTGATAGAGATGCTTCAATCTCCAGATGTACAACTCCAAGAAATGTCTGCCTTTGCATTAGGGAGATTAGCCCAGGACACACATAACCAAGCTGGCATTGCACATAATGGTGGCTTAGTGCCATTGCTCAAGCTTCTTGATTCCAAAAATGGGTCTTTGCAACATAATGTTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTATCCGATTTTATTAGGGTTGATGGAGTTCAGAGGTTGCAGGAAGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAGGAGAAAATCCATGGCCGTGTGCTGAAGCATTTGCTATATCTTATGCGAGTTTCAGAAAAGGGTTTGCAAAGGCGTGTTGCTTTGGCTTTTGCACATCTTTGTTCAGCAGATGATCAAAGAGGGATTTTTATAGAACACCATGGTCTCGAGTTGCTTATTGGGCTTCTTGGCTCATCTGGCTCTAAGCAGCAACTTGATGGTGCTGTAGCTTTATGCAAGTTAGCCAACAAAGCCTCAACTTTGTCTCCTGTGGATGCTGCTCCCCCTTCTCCAACACCACAGGTCTATTTAGGGGAGAAGTTTGTAAACAACCCTACGTTGTCAGACGTTACATTTTTGGTTGAAGGCAAACGGTTTTATGCTCACAGAATATGTCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAAGGATATTGAGATTCCAAATATTAGATGGGAAATTTTTGAGCTGATGATGAGATTTATATATACTGGATCAATAGAAATCTCGTTGGATATAGCTCAAGACCTTCTCCGAGTAGCTGATCAATATCTATTAGAAGGACTTAAGAGGCTCTGTGAATACACAATTGCAAAGGATATATCACTGGAGAACGTGTCAAGTATGTATGAACTTTCAGAAGCTTTTAATGCAATATCATTGAGGCACTCATGCATCCTTTTTATATTGGAGCAATTTGACAAATTGATTGCAATGCCTGGGCACTCTCTTCTGATTCAGTATATAATACCAGAGATTCGTAATTACTTCATTCAAGTTCTTACAAAGACCAACTCCCGTAAAATTCGACTGTAG 1542 0.4079 MEGGIPPLVNLLEFADPKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDIAIHYEAVAVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSPDVQLQEMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNVAFALYGLADNEDNVSDFIRVDGVQRLQEGEFIVQATKDCVAKTLKRLEEKIHGRVLKHLLYLMRVSEKGLQRRVALAFAHLCSADDQRGIFIEHHGLELLIGLLGSSGSKQQLDGAVALCKLANKASTLSPVDAAPPSPTPQVYLGEKFVNNPTLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDAKDIEIPNIRWEIFELMMRFIYTGSIEISLDIAQDLLRVADQYLLEGLKRLCEYTIAKDISLENVSSMYELSEAFNAISLRHSCILFILEQFDKLIAMPGHSLLIQYIIPEIRNYFIQVLTKTNSRKIRL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213869g00002 513 SMART BTB_4 346 443 IPR000210 GO:0005515
Stsc213869g00002 513 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515
Stsc213869g00002 513 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 45 87 IPR000225 GO:0005515
Stsc213869g00002 513 SUPERFAMILY POZ domain 337 441 IPR011333 -
Stsc213869g00002 513 Gene3D - 1 323 IPR011989 -
Stsc213869g00002 513 CDD BTB_POZ_ARIA_plant 333 448 - -
Stsc213869g00002 513 ProSiteProfiles BTB domain profile. 346 413 IPR000210 GO:0005515
Stsc213869g00002 513 SUPERFAMILY ARM repeat 4 314 IPR016024 -
Stsc213869g00002 513 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 507 IPR044282 -
Stsc213869g00002 513 SMART arm_5 159 199 IPR000225 GO:0005515
Stsc213869g00002 513 SMART arm_5 76 116 IPR000225 GO:0005515
Stsc213869g00002 513 SMART arm_5 274 314 IPR000225 GO:0005515
Stsc213869g00002 513 SMART arm_5 2 32 IPR000225 GO:0005515
Stsc213869g00002 513 SMART arm_5 118 158 IPR000225 GO:0005515
Stsc213869g00002 513 SMART arm_5 34 74 IPR000225 GO:0005515
Stsc213869g00002 513 Pfam BTB/POZ domain 339 440 IPR000210 GO:0005515
Stsc213869g00002 513 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 3 38 IPR000225 GO:0005515
Stsc213869g00002 513 Pfam Armadillo/beta-catenin-like repeat 118 157 IPR000225 GO:0005515
Stsc213869g00002 513 Pfam Armadillo/beta-catenin-like repeat 34 73 IPR000225 GO:0005515
Stsc213869g00002 513 Pfam Armadillo/beta-catenin-like repeat 2 31 IPR000225 GO:0005515
Stsc213869g00002 513 Gene3D Potassium Channel Kv1.1; Chain A 326 472 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213869g00002 Stsc-Chr213869 522 5244 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213869g00002 12 299 U-box Gene Family AT3G46510 26.389 8.58e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc213869g00002 BTB 5.9e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213869g00002 - - gmx:100784348 890.567