Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213837g00002 ATGGTTTTGTCTTGGACCAAAAGAAACGTCTTATTCCGCCGTCTCCGTAAGGTTACGAAGGAGCATCAACAACCTCCCTCCGCCGAAGATGAGATTGTCATCCCCGTCCACTTCTGCTGCCCAGTCAGCCTCGACATAATGAAAGACCCAGTTACCCTCTCAACCGGCATAACCTACGACAGGGACAGCATCGACAAGTGGCTTCAATCCGGTAACAACACTTGCCCCGTCACCAAACAGCTCCTAACTACCTCTGACGTCATCCCCAACCACGCCATCAGAAAGATGATTCAGGATTGGTGCGTTGATAACAGCTCCTACGGCATCCAGAGGATCCCCACTCCTAGGGTTCCTGTTTCACCCTACGAGGTTTCCCGCACATGCACCACCCTCTTGTCGGCTTCACAGCGTGCTGATGATGCCACGTGTCGGGAATCTTTGGCCAAGATCAAGGCTTGGGGGAAGGAGAGCGAGAGGAACAAGAGGTGTGTCGTTGGGAACGGTTCCGGTGATGTACTCGCACGTGCCTTTCACAATTTCTCACGTGATTCAGTTGACAAGCATGTGGTTGTCTTGGCAGAGATTTTGGAGAATCTGACGTGGATGCTTCCTATTGGCGAAGAGGGTAAACAGTGTTTGGGTTCGGAAATTTCGTTGGGTTCGTTGGTTTTGTTCCTAGGTGGTAATGACCTTGGAGCAAGACAAAGTGCTTCTTTGGTGATTAAGGAGCTAAGTGCCCAAGCATTGGAGAAAAATCAACAAATAATTGAGGCTTTGGTTAACATGATTAGGGAGCCAGTTGCTCCAATTGCTACAAAATCATGCTTAGCCACAATTTTCAATTTGGTTTCATTAGGACAAAGTAGAGAACTAATTGCAGAGAGATTTGTGGATTTGGGTTTGGTTTCATTGCTATTGGATATCATTCTTGATGGTGAAAGAGGGATAACTGAGAAGGCATTGGGTGTTCTTGATTCCATTTGTGATTTCCAAAAGGGGAAGGATTTTGCTAAGGGGAATGCTCTAATGGTTCCTCTTGCAATCAAGAAGATCTTGAGGGTGTCAGGATTGGCCTCTAGCTTTGCGGTTTCTATACTTTGGAAGGTTTGGGATAAGAGTGATGAAGGGGCTTTGATTGAGGCCCTTCAAGTAGGTGCCTTTCAGAAATTGTTGGTTGTGTTGCAAGTTGGTTGTGATGATACCACTAAGGAGAAGGCTACTGACTTGTTGAAACTGTTGAATGGTTATAGAGGCAAAGCAGAGTGTGCTGATTCTTCTTCATTGGAACTCAAGTACCTTAACAAGCCATTCTAA 1314 0.4635 MVLSWTKRNVLFRRLRKVTKEHQQPPSAEDEIVIPVHFCCPVSLDIMKDPVTLSTGITYDRDSIDKWLQSGNNTCPVTKQLLTTSDVIPNHAIRKMIQDWCVDNSSYGIQRIPTPRVPVSPYEVSRTCTTLLSASQRADDATCRESLAKIKAWGKESERNKRCVVGNGSGDVLARAFHNFSRDSVDKHVVVLAEILENLTWMLPIGEEGKQCLGSEISLGSLVLFLGGNDLGARQSASLVIKELSAQALEKNQQIIEALVNMIREPVAPIATKSCLATIFNLVSLGQSRELIAERFVDLGLVSLLLDIILDGERGITEKALGVLDSICDFQKGKDFAKGNALMVPLAIKKILRVSGLASSFAVSILWKVWDKSDEGALIEALQVGAFQKLLVVLQVGCDDTTKEKATDLLKLLNGYRGKAECADSSSLELKYLNKPF 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213837g00002 437 Gene3D - 123 414 IPR011989 -
Stsc213837g00002 437 SUPERFAMILY RING/U-box 25 109 - -
Stsc213837g00002 437 CDD RING-Ubox_PUB 35 87 IPR045210 -
Stsc213837g00002 437 SUPERFAMILY ARM repeat 186 416 IPR016024 -
Stsc213837g00002 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 111 IPR013083 -
Stsc213837g00002 437 ProSiteProfiles U-box domain profile. 33 107 IPR003613 GO:0004842|GO:0016567
Stsc213837g00002 437 PANTHER WDSAM1 PROTEIN 31 415 IPR045185 GO:0061630
Stsc213837g00002 437 Pfam U-box domain 34 105 IPR003613 GO:0004842|GO:0016567
Stsc213837g00002 437 SMART Ubox_2 37 100 IPR003613 GO:0004842|GO:0016567
Stsc213837g00002 437 FunFam RING-type E3 ubiquitin transferase 28 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213837g00002 Stsc-Chr213837 6028 7876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213837g00002 16 437 U-box Gene Family AT5G37490 45.814 2.25e-117 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213837g00002 - - gmx:548086 562.377