Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213837g00001 ATGAGGAAGAAGAAAACGACCCACGACTCCATAACCACAAAGCTCAAAACTTTACCCGTTTTCCTGTGTGGGTTCCTCTCATTAGTCCTCCTCGCCCACTCTCAACCTGCCTCCCCAGACGCACAAGCAATGCTGGCACTCAGAGACGCACTCAACCCGCCCGAATCACTTGGATGGTCCGACCCGAACCCATGCAAATGGGGTCGTGTCTTCTGCTCCGATTCCAAGCGGGTTACCCGGATCCAAATCGGCCGCCAAGGACTACAGGGCACAATCCCCAACAACACCCTTCAAACCCTGACCCAGTTGGAGCGCCTGGAGCTTCAGTACAACAACATCTCGGGTCCACTACCGGACTTATCAGGGTCGGGTTCTCTCCAAGTCCTTATTCTTAGTAACAATGGCTTCACCTCCATTCCCGCCGACTTTTTCGCCGGAATGTCACAGCTTCAGGCGGTGGAAATCGACAACAACCCTTTTCAGGCTTGGCAGATTCCTCAGTCTCTGCAGAACGCTTCCGCGCTTCAGAACTTCTCAGCTAATAGCGCCAACATCGTTGGAAAAATCCCAGATTTTTTCAACCCTGACGTGTTTCCCGGGCTGAGCCTTTTGCATTTAGCGTTAAACAACATCGAGGGTACGTTGCCTTCCGGGTTTTCCGGTTTGCAGCTTCAGACTCTGTGGCTGAACGGTCAGAAGGGTGATTCGAAGCTTGGTGGGGACATTGGTGTTTTGCAGAACATGACTTCACTGACGCAGGTTTGGTTGCACCAGAACTCCTTTTCTGGGCCTTTGCCCGATTTTTCTGGCTTACAAAACTTGCAAGATTTGAGCTTGAGGGATAACTCTTTCACGGGTCCTGTCCCTGCTTCTCTGCAGAGCCTAAAGTCTCTTAAAGTTGTGAACTTGACTAATAACTTGCTGCAGGGTCCAGTTCCTGTGTTTGGTTCTGGTGTTGTTGTTGATGATAGTGGTTTGAACAGTTTTTGTTTGACTAAACCTGGTGATTGTGATTCCAGAGTGAATGCTCTGCTTTCTATTGTTAGGTCTATGGGTTATCCCCAAAGGTTAGCTGAGAATTGGAAAGGGAATAATCCTTGTAATGATTGGATTGGGATTACTTGTAGTAATGGGAACATTACTGTTATTAATTTTCAGAAGATGGGGCTTAACGGCACCATATCGCCAGATTTTGCATCACTCAGTTCACTGCAAAGGTTGGTTCTTGCTGATAATAACCTTACTGGTCCAATCCCCGAGGAGCTAGCTACTCTTCCTGTTCTTACTCAGCTGAATGTTGCAAACAATCAGCTTTATGGGAAGGTTCCAAAGTTTAAGAGCAATGTAGCTGTTACCATAGATGNNNNNNNNNNACTGGGTTCGTCTCCGAATTCACCTGCTTCAAACACAATAGAAGGAAATGGTGGCAAAAAGAAGTCTTCCCATGTCCTAGTGATTGTTCTTGCTGTTGTTGGAGGTCTAGTGTTGATTGCTTTGATTGCTTTATTGGCTTTCTGCTTGTATAGGATGAAGCAAAAACAGCTGAGCAAGGTGCAGAGTCCGCGTGAGTTAGTTGTCCACCCTCGTCATTCTGGGTCGGATAATGAAAGTGTGAAGATAACAGTTGCAGGCTCAAGTGTCAGTGTTGGTAATGTTAGTGAATCGCAAACTGTGCCTGGCAGCGAGGGAGGGGACATACAGATGGTCGAAGCTGGAAATATGGTCATTTCTATACAAGTCCTGAGGAATGTCACTAACAATTTCAGTGAGCAGAATATATTGGGGCAAGGAGGTTTTGGAACAGTTTATAAAGGTGAATTACACGATGGCACGAAAATTGCAGTGAAAAGAATGGAGACCGGAGCAATATCTGGTAAGGGGGCAGCGGAATTTAAGTCTGAAATTGCTGTTTTGACTAAGGTTCGCCACCGTCATCTTGTCTCGCTTCTCGGTTACTGCTTGGATGGGAATGAGAAGCTTCTTGTGTATGAGTACATGCCTCAGGGGACGTTAAGTAGGCATCTGTTTAACTGGTTAGAAGAAGGACTAAAGCCAATGGAGTGGAATAGAAGATTAACTATTGCATTGGATGTGGCAAGGGCTGTTGAGTATCTCCATAGCTTGGCCCATCAAAGCTTTATTCATAGGGACTTAAAGCCTTCAAACATTCTCCTTGGAGATGATATGAGGGCAAAGGTTGCAGATTTCGGTCTTGTTCGTCTTGCTCCAGAAGGCAAGGCTTCAATAGAAACAAGAATTGCAGGAACTTTTGGGTATTTGGCTCCAGAATATGCAGTTACCGGCCGTGTGACAACTAAAGTTGATGTGTTCAGCTTTGGTGTGATATTAATGGAACTATTAACCGGAAGAAGAGCACTTGATGAGACCCAACCCGAGGATAGCATGCATCTTGTTACATGGTTCCGCAGAATGTACATAAACAAGGACACATTCCGCAAGGCCATTGACCCCGCAATCGAGCTCGATGAGGAAACTCTCGCTAGTGTACACACGGTGGCAGAGTTGGCCAGCCACTGCTGTGCGAGGGAGCCCTATCAAAGGCCTGACATGGGTCATGCTGTCAATGTGCTCGCTTCTCTTGCAGAACTCTGGAAACCATCTGATCAGAACCCCGAAGACATATACGGCATTGACCTCGACATGTCTTTGCCGCAAGCGCTTAAGAAGTGGCAGGCTTATGAAGGAGGAAGCCAAATGGAGTCGTCGTCTTCTTCGCTCCTACCTAGCTTGGACAACACGCAAACAAGCATCCCTACCCGTCCCTACGGATTCGCTGAATCCTTCACCTCAGCAGATGGGAGGTGA 2826 0.4703 MRKKKTTHDSITTKLKTLPVFLCGFLSLVLLAHSQPASPDAQAMLALRDALNPPESLGWSDPNPCKWGRVFCSDSKRVTRIQIGRQGLQGTIPNNTLQTLTQLERLELQYNNISGPLPDLSGSGSLQVLILSNNGFTSIPADFFAGMSQLQAVEIDNNPFQAWQIPQSLQNASALQNFSANSANIVGKIPDFFNPDVFPGLSLLHLALNNIEGTLPSGFSGLQLQTLWLNGQKGDSKLGGDIGVLQNMTSLTQVWLHQNSFSGPLPDFSGLQNLQDLSLRDNSFTGPVPASLQSLKSLKVVNLTNNLLQGPVPVFGSGVVVDDSGLNSFCLTKPGDCDSRVNALLSIVRSMGYPQRLAENWKGNNPCNDWIGITCSNGNITVINFQKMGLNGTISPDFASLSSLQRLVLADNNLTGPIPEELATLPVLTQLNVANNQLYGKVPKFKSNVAVTIDXXXXLGSSPNSPASNTIEGNGGKKKSSHVLVIVLAVVGGLVLIALIALLAFCLYRMKQKQLSKVQSPRELVVHPRHSGSDNESVKITVAGSSVSVGNVSESQTVPGSEGGDIQMVEAGNMVISIQVLRNVTNNFSEQNILGQGGFGTVYKGELHDGTKIAVKRMETGAISGKGAAEFKSEIAVLTKVRHRHLVSLLGYCLDGNEKLLVYEYMPQGTLSRHLFNWLEEGLKPMEWNRRLTIALDVARAVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELLTGRRALDETQPEDSMHLVTWFRRMYINKDTFRKAIDPAIELDEETLASVHTVAELASHCCAREPYQRPDMGHAVNVLASLAELWKPSDQNPEDIYGIDLDMSLPQALKKWQAYEGGSQMESSSSSLLPSLDNTQTSIPTRPYGFAESFTSADGR 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213837g00001 941 PANTHER OSJNBA0070M12.3 PROTEIN 24 941 - -
Stsc213837g00001 941 ProSitePatterns Protein kinases ATP-binding region signature. 594 616 IPR017441 GO:0005524
Stsc213837g00001 941 MobiDBLite consensus disorder prediction 905 930 - -
Stsc213837g00001 941 FunFam receptor protein kinase TMK1 550 665 - -
Stsc213837g00001 941 Pfam Protein kinase domain 589 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc213837g00001 941 SMART LRR_typ_2 401 425 IPR003591 -
Stsc213837g00001 941 SMART LRR_typ_2 198 221 IPR003591 -
Stsc213837g00001 941 SMART LRR_typ_2 124 146 IPR003591 -
Stsc213837g00001 941 SMART LRR_typ_2 271 294 IPR003591 -
Stsc213837g00001 941 SMART LRR_typ_2 100 123 IPR003591 -
Stsc213837g00001 941 FunFam receptor protein kinase TMK1 666 883 - -
Stsc213837g00001 941 ProSiteProfiles Leucine-rich repeat profile. 125 146 IPR001611 GO:0005515
Stsc213837g00001 941 ProSiteProfiles Protein kinase domain profile. 588 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc213837g00001 941 FunFam Leucine-rich repeat receptor-like kinase 339 462 - -
Stsc213837g00001 941 MobiDBLite consensus disorder prediction 905 941 - -
Stsc213837g00001 941 Gene3D Ribonuclease Inhibitor 37 333 IPR032675 -
Stsc213837g00001 941 SMART serkin_6 588 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc213837g00001 941 Gene3D Phosphorylase Kinase; domain 1 550 665 - -
Stsc213837g00001 941 SUPERFAMILY Protein kinase-like (PK-like) 566 872 IPR011009 -
Stsc213837g00001 941 CDD STKc_IRAK 594 864 - -
Stsc213837g00001 941 Gene3D Transferase(Phosphotransferase) domain 1 666 883 - -
Stsc213837g00001 941 Pfam Leucine rich repeat N-terminal domain 38 73 IPR013210 -
Stsc213837g00001 941 Pfam Leucine rich repeat N-terminal domain 340 376 IPR013210 -
Stsc213837g00001 941 SUPERFAMILY L domain-like 58 447 - -
Stsc213837g00001 941 Gene3D Ribonuclease Inhibitor 338 461 IPR032675 -
Stsc213837g00001 941 ProSitePatterns Serine/Threonine protein kinases active-site signature. 713 725 IPR008271 GO:0004672|GO:0006468
Stsc213837g00001 941 FunFam Receptor-like kinase TMK4 38 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213837g00001 Stsc-Chr213837 2215 5556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213837g00001 81 877 Receptor kinase-like Gene Family AT1G55610 29.930 5.82e-90 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Stsc213837g00001 Pkinase 5.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213837g00001 K00924 - gmx:100789646 1372.84