Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213793g00001 ATGGATGCATACTCCTCTGGAGAAGAAGTGGTTGTTAAGACAAGAAAACCTTATACAATTACAAAGCAAAGAGAACGATGGACAGAGGAGGAGCATAATCGGTTCCTAGAAGCCCTCAAGCTATATGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCTGTGCAAATCAGGAGCCATGCACAGAAATTCTTTTCAAAGTTGGAGAAAGAGGCCCTTGTAAAGGGTGTTCCGTTAGGACAGGCTATTGATATAGACATCCCCCCACCAAGGCCCAAAAGAAAACCAAGCAATCCTTATCCCCGTAAGACTAATGTTGGCTCCCCAACCTCACATAGTGGAGCAAAATACGGAAAACTTCTCATTTCAGTTGCATCTTCACATTGTAAACAAGCACTGGACTTGGAGAAAGAACCTCTACCAGAGAAGCATAATGAAGATGAAAGGTCAACATATGCAAACGAAAATAAGACTGAAGGCTGCTCAAAAGTGTTTACTGTTCTTGAGGAGGCACCCAGTTCGTGCGCTTCTTCAGCAAACAAGAATTTAATACCGTCACTGCCACTGCAAAATTCATGTGCCGTAAGGGAGTTTATACCTTTAGTGAAAGATGTAACAGCTGAAGATGAAGGCAATAGATCTTTTGTTACTGTTGAACTTGAAAATCAGAAGTTGGAGATAGAAGATGGCAAGTGCACGCAAGCCGATAGCATTTGTAAAGCCTCTAAGTTGGACATTTCTTGTGCTTCTAAAGCCAAAATGGTTCAAACTGAGAAAGCAGATGGTCTTAATTGTGTATTCTCAGGAGATGGAATTCAAGGCGGTCAGAATTACCCAAGGCATGTCACCGTGCACGTCATTGATGGGAATCATGGAACTGCTACACAGAATCCATCCCATGATACATTGTTTCGAGACTCCATAATTCAGCAAGTAGCAGGGGTTAATGGGAAACCAAATCTTTTCACCAATCCAGCTGCATCAAACACAAGTGAAAGTCAAAATAACACAGCAAGATCCTCTATTCATCAGGCATTTGCCCCATGTCCTCCTTTCACGCAGCATAATCAGGAAGGTTACCAAGCATTTCTTCACATGTCGTCCACATTTTCAAGTCTTATTGTCTCTACTTTGATGCAAAACCCTGCCGCCCATGCTGCCGCAAGTTTTGCTGCTACGATTTGGCCCTGTGCAAGTGCAGAAACACCAGCAAATTCTCGGTCGTGCTCTCAAGGAAGTTTTCCATCTAGCCATATTGGCTCTCCTCCAAGTATGGCAGCTATAGCAGCTGCGACTGTGGCTGCTGCAACTGCATGGTGGGCTGCCCATGGGCTGCTTCCGTTGTGTGCCCCACTTCATACTGCTTTTACCTGTCCACCTGCATCAGCAACTGCAGCTCCCTTAATCAATACTGGCGAGGCACCACCGAAGACAGAGCAAGGAAACATTGCTCCAGACAATCCTCCTCTGCAAGATCAGACAGTGGATCCGGAATATTCAGAAGTTCTTCATGCTCAAGATTCGTCTTCTAAGTCACCAGCTGTTTCTTCATCCGAATGTGAAGAGATTGGAGCTGCCCAGTTAAACACTTCAACAAAGGCTATTACTGATCATGAGAACAACCAAGAAAATTCTGAACACCTTGATCCTGACAAAGTGAATGGCAGAAAACAAGTTGACCGTTCCTCATGTGGTTCCAACACAACCTCTAGCAGTGAAGAAACAGATGCACTAGAGAAGGAAGAAAAAGAAAAGGAAGAGTCCAAAACACACGATGCAAACCATGTAGATATTGAGCCTATTAATCGTCGATGTAGAAGCATTAGCTACCTTACAGATTCTTGGAAGGAGGTCTCCGAAGAGGGACGACTGGCCTTCCAGGCTCTATTCTCCAGAGAGGTGTTACCCCAAAGCTTTTCCCCTCCGCATGATTTGATAAACAAGGATCATCAGATGGGCAATATCAAAGATGACAAGCAGCAGGTTGAGTGCAAAGATGAAGATCTTGACAACAAGAAATGCATTTCTCAGTGTGTAGGATTGCAAAAACACCTGCAAATTGAAGAAAATAACAAAGACGAGGAGGGACTGCTGGCCATAAGTCTTGGACAAGGTAAGCTCAAGACTCGCCGAACAGGGTTTAAACCTTACAAAAGATGTTCAATGGATGCAAAGGAAACCAGGATCGGAATTGCCTGTAACCATGGTGAAGAGAAGGGTCCCAAAAGAATACGCTTGGAAGGGGAGGCTTCAACATGA 2271 0.4443 MDAYSSGEEVVVKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALVKGVPLGQAIDIDIPPPRPKRKPSNPYPRKTNVGSPTSHSGAKYGKLLISVASSHCKQALDLEKEPLPEKHNEDERSTYANENKTEGCSKVFTVLEEAPSSCASSANKNLIPSLPLQNSCAVREFIPLVKDVTAEDEGNRSFVTVELENQKLEIEDGKCTQADSICKASKLDISCASKAKMVQTEKADGLNCVFSGDGIQGGQNYPRHVTVHVIDGNHGTATQNPSHDTLFRDSIIQQVAGVNGKPNLFTNPAASNTSESQNNTARSSIHQAFAPCPPFTQHNQEGYQAFLHMSSTFSSLIVSTLMQNPAAHAAASFAATIWPCASAETPANSRSCSQGSFPSSHIGSPPSMAAIAAATVAAATAWWAAHGLLPLCAPLHTAFTCPPASATAAPLINTGEAPPKTEQGNIAPDNPPLQDQTVDPEYSEVLHAQDSSSKSPAVSSSECEEIGAAQLNTSTKAITDHENNQENSEHLDPDKVNGRKQVDRSSCGSNTTSSSEETDALEKEEKEKEESKTHDANHVDIEPINRRCRSISYLTDSWKEVSEEGRLAFQALFSREVLPQSFSPPHDLINKDHQMGNIKDDKQQVECKDEDLDNKKCISQCVGLQKHLQIEENNKDEEGLLAISLGQGKLKTRRTGFKPYKRCSMDAKETRIGIACNHGEEKGPKRIRLEGEAST 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213793g00001 756 SMART sant 23 71 IPR001005 -
Stsc213793g00001 756 MobiDBLite consensus disorder prediction 507 525 - -
Stsc213793g00001 756 MobiDBLite consensus disorder prediction 543 562 - -
Stsc213793g00001 756 MobiDBLite consensus disorder prediction 563 577 - -
Stsc213793g00001 756 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Stsc213793g00001 756 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Stsc213793g00001 756 MobiDBLite consensus disorder prediction 506 525 - -
Stsc213793g00001 756 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Stsc213793g00001 756 PANTHER SWI/SNF COMPLEX-RELATED 7 592 - -
Stsc213793g00001 756 MobiDBLite consensus disorder prediction 542 600 - -
Stsc213793g00001 756 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Stsc213793g00001 756 CDD SANT 26 69 IPR001005 -
Stsc213793g00001 756 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Stsc213793g00001 756 MobiDBLite consensus disorder prediction 86 118 - -
Stsc213793g00001 756 Gene3D - 26 73 - -
Stsc213793g00001 756 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Stsc213793g00001 756 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Stsc213793g00001 756 MobiDBLite consensus disorder prediction 578 600 - -
Stsc213793g00001 756 MobiDBLite consensus disorder prediction 471 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213793g00001 Stsc-Chr213793 1275 7712 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc213793g00001 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213793g00001 K12133 - gmx:780540 981.089