Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213764g00001 ATGAATTTGATGTCTCATGATGGGTTTCCACTGTTTATTGGTTCTAAGAGTCTCTTACTTACTACTCACAAGCAATCTCAATTGAAATGGCATAAGGCTTATTTCAATTCATTGGAAGGAAATGAATCATTACCTTTGAACATGGGAAGCATGGGAAAGGGTCAAGTATGGATTAATGAGAAGTTGAAGCAAATGGTGGAGAACAAAAACTTTTGGATAATGGATCACGCAAAAGAGAAGAAGAGGCTGAACATGAAGCAAGTGAAGACTCTTGAGAAGAGCTTTGAGTTAAGGAACAAGCTTGGACCTGAGTGGAAAATGCAGCTTGCAAGGGCTCTTAGCTTTCAACCCAGACAAATTGTAATTTGGTTCCCGAAACAGAAGCCATACATGGTAAACCAAGCAATTGGAAAAAGATTATAA 423 0.383 MNLMSHDGFPLFIGSKSLLLTTHKQSQLKWHKAYFNSLEGNESLPLNMGSMGKGQVWINEKLKQMVENKNFWIMDHAKEKKRLNMKQVKTLEKSFELRNKLGPEWKMQLARALSFQPRQIVIWFPKQKPYMVNQAIGKRL 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213764g00001 140 CDD homeodomain 78 124 IPR001356 GO:0003677
Stsc213764g00001 140 Pfam Homeodomain 78 124 IPR001356 GO:0003677
Stsc213764g00001 140 SMART HOX_1 76 138 IPR001356 GO:0003677
Stsc213764g00001 140 Gene3D - 84 128 - -
Stsc213764g00001 140 SUPERFAMILY Homeodomain-like 73 126 IPR009057 -
Stsc213764g00001 140 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Stsc213764g00001 140 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 70 124 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213764g00001 Stsc-Chr213764 12 1585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213764g00001 77 124 Homeobox Transcription Factor Family AT1G69780 75.000 7.20e-18 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Stsc213764g00001 Homeodomain 1.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213764g00001 K09338 - nnu:104586964 76.6405