Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213660g00001 ATGGATAGGCTCATAAGATTAGACCCATCAAACGTAGTCCCAATAAGAGTTGAACCAGGTCAAAAATGCCAAGGCAAGATCACCTTGAGAAATGTCATGTACACCATGCCAGTGGCTTTCAGGCTTCAACCACTCATTAGGACTCGTTACACCGTGAAGCCTCAAACCGGTGTCATATCCCCATTAGGCACAGTAACTCTTGAGATTTTCTACTATCTTCCTCCGGGTTCCACCCTTCCACATTCTTTCCCTCACACAGATGATTCCTTCCTCCTCCACAGCGTCGTCGTCCCCGGCGCAACAATCAAAGAGCCTTCCTCCATGTATGACGCTGTTCCCAGTGACTGGTTCACTACCAAGAAGAAGCAAGTTTTCATCGACAGCGGAATCAAGATCATCTTCGTTGGCTCTCAGATCCTCGCTCAGCTTGTTTCCGATGGTTCAATGGACGAAATCAGAGAGGTTCTTGAAAAAAGTGATCCCTCATGGAAGGCTGTGGATTCCGTTGATCCACAAGGACAGTCGTTGCTTCACCTCACGATTTCGCAACGAAGAGCTGATCTTGTTCAGTTACTCCTCGAATTTGATCCGGACATAGAGATTCCGAGTCGTTCTGGGTCGACCCCACTCGAGGCCGCGTCCTCATCGGGCGAGACCTTGATTGTGGAGCTTCTTTTGGCCCACCGGGCCAACCCAGAACGCTCGGAGTCTTCTATGTTCGGACCGATTCATTATGCCTCCAGAGGAGGACACGTGGAGGTTCTAAGGCTTCTCCTTCTCAAAGGCGCTAAGGTGGATTCACTCACAAGAGATGGCAACACGGCGTTACATCTGGCCGTTGAAGAGCGAAGAAGAGACTGCGCTAGGCTCCTTCTCGCAAACGGCGCAAGAACGGACGTTAGAAACACGCGGGAAGGTGACACTCCTTTGCACATAGCAGCATCAACAGGCGATGATCACATGGTGAAGCTCTTATTGCAAAAAGGCGCGAACAAAGACGTGAGGAATCTGCAGGGGAAGACGGCGTATGACGTGGCAGCAGAGAACGGACACGCGCGTCTCTTCGACGCGCTTCGGTTGGGTGATAACTTGTGCGTGGCGGCGAGAAAAGGCGAGGTTAGGACAATCCAGAAGCTTCTAGAAAGTGGCGCGGCGATCAACGGGAGGGACCAACACGGATGGACGGCGCTGCACAGAGCGTCGTTTAAAGGGAGAATGGATGCGGTTCGTGTTTTGGTGGAAAAAGGGATCGACGTTGATGCGAAGGACGAAGACGGTTACACGGCGTTGCATTGCGCTGCTGAGTCGGGTCATGCTGACGTCACGGAGTTTCTGGTGAAGAAAGGTGCAGATGTGGAAGGGAGAACAAGCAAAGGTGTAACTGCTCTGCAGATAGCAGAGTCTTTGCACTATGTAGGGATCACAAGGATTCTTGTTAATGGAGGAGCTACTAGGGATAATAATAATAATTTGAATCAGATAGCCAAGCCTGCTGTGATTCCTTTTGGGAAAAACATGGAAGATGGGAGTTTGATGAAGAAGAAGAAGATGGCTAGAAGCAGAGTGGTACGTGGTAATAATAATAATAACTTTGATCGTTCTTCAACGCCTTTGGCTGTGCTCTAA 1626 0.5 MDRLIRLDPSNVVPIRVEPGQKCQGKITLRNVMYTMPVAFRLQPLIRTRYTVKPQTGVISPLGTVTLEIFYYLPPGSTLPHSFPHTDDSFLLHSVVVPGATIKEPSSMYDAVPSDWFTTKKKQVFIDSGIKIIFVGSQILAQLVSDGSMDEIREVLEKSDPSWKAVDSVDPQGQSLLHLTISQRRADLVQLLLEFDPDIEIPSRSGSTPLEAASSSGETLIVELLLAHRANPERSESSMFGPIHYASRGGHVEVLRLLLLKGAKVDSLTRDGNTALHLAVEERRRDCARLLLANGARTDVRNTREGDTPLHIAASTGDDHMVKLLLQKGANKDVRNLQGKTAYDVAAENGHARLFDALRLGDNLCVAARKGEVRTIQKLLESGAAINGRDQHGWTALHRASFKGRMDAVRVLVEKGIDVDAKDEDGYTALHCAAESGHADVTEFLVKKGADVEGRTSKGVTALQIAESLHYVGITRILVNGGATRDNNNNLNQIAKPAVIPFGKNMEDGSLMKKKKMARSRVVRGNNNNNFDRSSTPLAVL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213660g00001 541 Gene3D - 136 304 IPR036770 -
Stsc213660g00001 541 SUPERFAMILY PapD-like 2 150 IPR008962 -
Stsc213660g00001 541 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Stsc213660g00001 541 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Stsc213660g00001 541 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Stsc213660g00001 541 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 144 354 - -
Stsc213660g00001 541 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Stsc213660g00001 541 SUPERFAMILY Ankyrin repeat 166 491 IPR036770 -
Stsc213660g00001 541 SMART ANK_2a 305 334 IPR002110 GO:0005515
Stsc213660g00001 541 SMART ANK_2a 172 201 IPR002110 GO:0005515
Stsc213660g00001 541 SMART ANK_2a 238 267 IPR002110 GO:0005515
Stsc213660g00001 541 SMART ANK_2a 271 300 IPR002110 GO:0005515
Stsc213660g00001 541 SMART ANK_2a 458 487 IPR002110 GO:0005515
Stsc213660g00001 541 SMART ANK_2a 205 234 IPR002110 GO:0005515
Stsc213660g00001 541 SMART ANK_2a 338 366 IPR002110 GO:0005515
Stsc213660g00001 541 SMART ANK_2a 392 421 IPR002110 GO:0005515
Stsc213660g00001 541 SMART ANK_2a 425 454 IPR002110 GO:0005515
Stsc213660g00001 541 ProSiteProfiles Ankyrin repeat region circular profile. 205 231 - -
Stsc213660g00001 541 Gene3D - 360 538 IPR036770 -
Stsc213660g00001 541 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Stsc213660g00001 541 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
Stsc213660g00001 541 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Stsc213660g00001 541 ProSiteProfiles Ankyrin repeat region circular profile. 238 266 - -
Stsc213660g00001 541 Pfam Ankyrin repeats (many copies) 403 446 IPR002110 GO:0005515
Stsc213660g00001 541 Gene3D - 305 359 IPR036770 -
Stsc213660g00001 541 ProSiteProfiles Ankyrin repeat profile. 238 270 IPR002110 GO:0005515
Stsc213660g00001 541 PRINTS Ankyrin repeat signature 408 422 IPR002110 GO:0005515
Stsc213660g00001 541 PRINTS Ankyrin repeat signature 306 321 IPR002110 GO:0005515
Stsc213660g00001 541 Pfam Ankyrin repeats (many copies) 302 346 IPR002110 GO:0005515
Stsc213660g00001 541 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Stsc213660g00001 541 Pfam Ankyrin repeats (3 copies) 152 233 IPR002110 GO:0005515
Stsc213660g00001 541 Pfam Ankyrin repeats (3 copies) 242 301 IPR002110 GO:0005515
Stsc213660g00001 541 Gene3D Immunoglobulins 1 134 IPR013783 -
Stsc213660g00001 541 MobiDBLite consensus disorder prediction 522 541 - -
Stsc213660g00001 541 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Stsc213660g00001 541 ProSiteProfiles Ankyrin repeat region circular profile. 425 453 - -
Stsc213660g00001 541 MobiDBLite consensus disorder prediction 516 541 - -
Stsc213660g00001 541 ProSiteProfiles Ankyrin repeat region circular profile. 305 336 - -
Stsc213660g00001 541 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
Stsc213660g00001 541 ProSiteProfiles Ankyrin repeat profile. 364 391 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213660g00001 Stsc-Chr213660 3767 6011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213660g00001 307 486 Ion Channels AT4G32500 29.121 2.25e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213660g00001 - - qsa:O6P43_006204 819.305