Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213651g00003 ATGGTTGATTCCAAGGATAGTAGGAAAGGGTGTAGGAGGAAGGTGAGTCTTGACAAATGCCAAGGGAATGCAACCATGTTGAACTTGGATAATACTCAGTTGCTCACTTATTCCCCCGAGGTTCAGTCGCAGGTCTTCTTCATCGGTATATCGGCTTGCAAGGGTAATTGCCTTTCCAACACTGGTGGTTGTTTTGCTTCTACTGCCTTGGGGGATGGCACGGGGCAATGTTACTTGAAGTCGGAAGATTTGGTCTCTGGATATTCGAGTCCTGCACTGCCTAGCACTTCTTATATCAAGGTTTGTGCACCAGTGGATCCGAATCCGCCGCCCTCTTCAGGGGTGACTGTGAAGCAGAAGAGCTCGAGAGTACCGGCCTGGGTTGTGGTGGTTGTCGTTTTGGCCACTCTTCTAGCCTTGGTTGCTTTTGAAGGTGGTTTGTGGATGTGGTGTTGTAGGAACAACAAAAGGTTTGGTGCATTGTCTGCACAGTATGCTCTCCTTGAGTATGCTTCTGGTGCACCGGTCCAATTCTCCTACAAGGAGCTCGAGCGTGCGACGAAGGGGTTCAAGGAGAAGCTTGGAGCTGGAGGATTCGGTGCTGTCTATAGAGGAACTCTTGTTAATAAAACTGTTGCTGCGGTGAAGCAACTCGAGGGCATCGAGCAAGGTGAGAAACAGTTTAGGATGGAAGTTGCTACCATTAGTAGCACTCATCATCTGAATTTGGTGAGGCNNNNNNNNNNATTTTGCTCGGAAGGACGCCACAGGCTTTTAGTTTATGAGTTCATGAAAAACGGTTCTCTAGATAATTTTCTATTCATGTCAGAGGGACATTCAGGAAAATTGTTGAATTGGGAATACCGATACAGCATCGCTCTTGGCACTGCGAGGGGCATCACATACCTTCACGAGGAGTGTCGCGACTGCATAGTCCATTGCGATATAAAGCCTGAAAACATTCTCTTGGATGAGAATTATGTTTCTAAGGTCTCTGATTTCGGTCTTGCAAAGCTCATAAATCCGAAGGACCATAGGCATAGGACCTTGACTAGTGTGAGAGGAACCAGAGGATATTTAGCACCTGAGTGGCTTGCAAATCTTCCAATCACATCTAAATCCGATGTTTACAGCTACGGCATGGTTTTGTTGGAGATTGTGAGCGGAAGGAGGAATTTCGAGGTCTCGGAGGAAACAAATCGGAAAAAATTCTCCATTTGGGCCTATGAAGAGTTTGAGAAAGGCAACATCAATGGAATCTTGGACAAAAGGCTAGTGGACCAAGAAGTTGATATGGCGCAAGTGACGAGAGCAATTCAGGCAAGCTTTTGGTGCATCCAGGAGCAGCCCTCGCATAGACCGACGATGAGCAGAGTGGTGCAAATGCTCGAAGGCGTTGCTGAGATTGAGAGGCCGCCGGCACCAAGGTTGGCCATGGAAGGAGCTGTTGTTAGTGGAACAAGCACAAACATAAGTAGCAATGTGAGTGCATTCTCCACGGTTGCAGCCTCACCCCATGGTCTTTCTTCCTCGTCGTCGTTTCAGACCAGTGGTGTCTCGACCTTAACCTCGGGAAGGACCACCGAGAAGGCATCTTCATCTCTCATACAATCAGAACCATGA 1623 0.4763 MVDSKDSRKGCRRKVSLDKCQGNATMLNLDNTQLLTYSPEVQSQVFFIGISACKGNCLSNTGGCFASTALGDGTGQCYLKSEDLVSGYSSPALPSTSYIKVCAPVDPNPPPSSGVTVKQKSSRVPAWVVVVVVLATLLALVAFEGGLWMWCCRNNKRFGALSAQYALLEYASGAPVQFSYKELERATKGFKEKLGAGGFGAVYRGTLVNKTVAAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRXXXXFCSEGRHRLLVYEFMKNGSLDNFLFMSEGHSGKLLNWEYRYSIALGTARGITYLHEECRDCIVHCDIKPENILLDENYVSKVSDFGLAKLINPKDHRHRTLTSVRGTRGYLAPEWLANLPITSKSDVYSYGMVLLEIVSGRRNFEVSEETNRKKFSIWAYEEFEKGNINGILDKRLVDQEVDMAQVTRAIQASFWCIQEQPSHRPTMSRVVQMLEGVAEIERPPAPRLAMEGAVVSGTSTNISSNVSAFSTVAASPHGLSSSSSFQTSGVSTLTSGRTTEKASSSLIQSEP 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213651g00003 540 Gene3D Transferase(Phosphotransferase) domain 1 264 473 - -
Stsc213651g00003 540 SMART serkin_6 188 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc213651g00003 540 CDD STKc_IRAK 194 465 - -
Stsc213651g00003 540 PANTHER OS07G0415500 PROTEIN 1 476 - -
Stsc213651g00003 540 Pfam Protein kinase domain 191 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc213651g00003 540 SUPERFAMILY Protein kinase-like (PK-like) 170 464 IPR011009 -
Stsc213651g00003 540 Gene3D Phosphorylase Kinase; domain 1 155 263 - -
Stsc213651g00003 540 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 264 473 - -
Stsc213651g00003 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Stsc213651g00003 540 ProSiteProfiles Protein kinase domain profile. 188 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc213651g00003 540 ProSitePatterns Protein kinases ATP-binding region signature. 194 216 IPR017441 GO:0005524
Stsc213651g00003 540 ProSiteProfiles PAN/Apple domain profile. 20 102 IPR003609 -
Stsc213651g00003 540 MobiDBLite consensus disorder prediction 509 540 - -
Stsc213651g00003 540 FunFam S-receptor-like serine/threonine-protein kinase 160 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213651g00003 Stsc-Chr213651 5372 7553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213651g00003 161 473 Receptor kinase-like Gene Family AT5G20050 43.077 4.48e-81 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc213651g00003 Pkinase 6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213651g00003 - - cam:101506838 875.544