Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213636g00001 ATGCAGCTAGGGGATCCAACTGTGTTGGAAGCCTCCTCCACGGAGGCGGTGGAGGGCGGCGGCGAGGCCATTGGTTCCGCGATGTCGGAAGTAGAGAAAGAAATGATTGTAAAAGAAGGTGGTGGGAGCGGCGGCGAAGGTGGTGGTGATGAAGGTGAGAAGATGAACTCGGGTGGAAACCGGTGGCCCCGGCAAGAAACGTTGGCTCTGTTGAAGATAAGGTCGGATATGGATGCTGTGTTTAGAGATTCAAGTCTCAAGGGTCCACTTTGGGAAGATGTTTCAAGGAAACTAGGAGAACTTGGATATCATCGAAGTGCAAAGAAGTGCAAAGAGAAATTTGAGAACGTTTACAAGTACCACAAGAGAACCAAAGAGAGCAGAAGTGCAAAATCCGAAGGAAAAACCAAAACCTACAAATTCTTTGACCAATTGCAAGCTCTTGAGAATCAATTCACTCTCTCATATAACCATAACCCTCCATCAAAGCCACAACCACCACCACCACCACCACCAACTTTGCCACCAACAAATATACTCCCATTATTGCCAACAAGGCCTAGTGACACCACCACTACCACCGCCGCCGCCACCACCACCACCACCACACCTATCATCATCTCTTATGCCACCACTGTTCCATCCACCAACCCTACACCACCACTTGTCACCAACCCTAATCCACCACCATCACAACAACAACTCAATAATAATAACAACAACAATGAGAGTAGTGTTCATCATCAACATTCTTTGTCGATAATGAACAACCTTTTCTCTTCCACCTCGACTTCTTCCTCCACGGCCTCTGACGAGGACCTGGAGGAGAAGTACAGGAAGAAGAGAAAATGGAAGGAGTACTTCAGGAGGCTCACTAGGCAGGTTCTTACCAAGCAAGAGGAGATGCAGAAGAGATTCTTGGAAGCCATTGAAAAGAGAGAGAGGGAGCAAGTTGCTCAGCAAGATGCCTGGAGGATGCAAGAGATGGCCAGGATCAACCGAGAGCATGACATTCTCGTTCAAGAAAGATCCACCGCCGCCGCCAAAGACGCCGCTGTCATCACATTCTTGCAAAAGATATCCGGCCAACAAACTCCACCACCACCAACAATCACAGTTTCCTTCCAACAACCACCACCACCACAACAACCAGAACCGCAACCGCAACCACAACCACAACCACAACCTGCATTGATGGCAAAGAACAATTTAGAACTACTCCAGAAAGTGACGAAGAACGGTAGTGAGAGTGCGGGTCCATTATTGAGGAACAGTTCATCAGCATCATCAAGGTGGCCTAAAGCTGAAGTACACGCATTGATAAGGCTTCGAACGAGCATGGAACCAAAGTATCAGGAGAATGGACCAAAAGCACCGTTATGGGAGGACATATCAGCAGGGATGCAGAGGCTAGGGTACAACAGAAGCGCCAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTCAAAGAGAGCAAGAAGCAACGCCGAGAAGATTCCAAGACTTGTCCCTATTTCCACGAGCTCGATGCTCTTTACAGAGAGAAGAGCAGCAAAGGCCAGAACAACAACAACAATCCTTTCTCGTTGATGGAGCCGTTGATGGTGCAACCCGAGCAGCAATGGAGGCCTCCCCCTCAGAATCATCAAGATAAGAATGATAATAATGATGAATCGAGGAAGAGAGAGAGAGAATACGATGAAGAAGAAGAAGAAGAGGAGGATGACGATGGAGTATTAGATAATGAGGATGATGGTGATGGAGATAGTGCGGAAGATGAAGGAGCTAACCGTTATGAGATTGCGACAAATAAACTTTCTTCAGTGGACACCGTTGAATGA 1857 0.4755 MQLGDPTVLEASSTEAVEGGGEAIGSAMSEVEKEMIVKEGGGSGGEGGGDEGEKMNSGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEDVSRKLGELGYHRSAKKCKEKFENVYKYHKRTKESRSAKSEGKTKTYKFFDQLQALENQFTLSYNHNPPSKPQPPPPPPPTLPPTNILPLLPTRPSDTTTTTAAATTTTTTPIIISYATTVPSTNPTPPLVTNPNPPPSQQQLNNNNNNNESSVHHQHSLSIMNNLFSSTSTSSSTASDEDLEEKYRKKRKWKEYFRRLTRQVLTKQEEMQKRFLEAIEKREREQVAQQDAWRMQEMARINREHDILVQERSTAAAKDAAVITFLQKISGQQTPPPPTITVSFQQPPPPQQPEPQPQPQPQPQPALMAKNNLELLQKVTKNGSESAGPLLRNSSSASSRWPKAEVHALIRLRTSMEPKYQENGPKAPLWEDISAGMQRLGYNRSAKRCKEKWENINKYFKKVKESKKQRREDSKTCPYFHELDALYREKSSKGQNNNNNPFSLMEPLMVQPEQQWRPPPQNHQDKNDNNDESRKREREYDEEEEEEEDDDGVLDNEDDGDGDSAEDEGANRYEIATNKLSSVDTVE 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213636g00001 618 CDD GT1 60 125 - -
Stsc213636g00001 618 FunFam Trihelix transcription factor GT-2 432 493 - -
Stsc213636g00001 618 FunFam Trihelix transcription factor GT-2 62 123 - -
Stsc213636g00001 618 CDD GT1 430 495 - -
Stsc213636g00001 618 ProSiteProfiles Myb-like domain profile. 424 488 IPR001005 -
Stsc213636g00001 618 MobiDBLite consensus disorder prediction 572 596 - -
Stsc213636g00001 618 MobiDBLite consensus disorder prediction 229 250 - -
Stsc213636g00001 618 MobiDBLite consensus disorder prediction 183 218 - -
Stsc213636g00001 618 MobiDBLite consensus disorder prediction 555 571 - -
Stsc213636g00001 618 Pfam Myb/SANT-like DNA-binding domain 60 148 IPR044822 -
Stsc213636g00001 618 Pfam Myb/SANT-like DNA-binding domain 430 517 IPR044822 -
Stsc213636g00001 618 SMART sant 58 120 IPR001005 -
Stsc213636g00001 618 SMART sant 428 490 IPR001005 -
Stsc213636g00001 618 MobiDBLite consensus disorder prediction 361 397 - -
Stsc213636g00001 618 MobiDBLite consensus disorder prediction 1 63 - -
Stsc213636g00001 618 Gene3D - 432 493 - -
Stsc213636g00001 618 Gene3D - 62 123 - -
Stsc213636g00001 618 MobiDBLite consensus disorder prediction 154 250 - -
Stsc213636g00001 618 Coils Coil 557 581 - -
Stsc213636g00001 618 MobiDBLite consensus disorder prediction 542 618 - -
Stsc213636g00001 618 ProSiteProfiles Myb-like domain profile. 54 118 IPR001005 -
Stsc213636g00001 618 PANTHER FI21293P1 39 568 - -
Stsc213636g00001 618 MobiDBLite consensus disorder prediction 160 182 - -
Stsc213636g00001 618 MobiDBLite consensus disorder prediction 371 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213636g00001 Stsc-Chr213636 1158 4258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213636g00001 45 546 Trihelix Transcription Factor Family AT1G76890 49.611 6.54e-137 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc213636g00001 Myb_DNA-bind_4 3.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213636g00001 - - gsj:114370603 621.313