Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213571g00003 TTGGGTCTAAGTGGCAACAACATTTCAGGTCCATTGCCAAGTTTTGATAAGAGTTTGAAGATTGTTATTGATGGTAGCTCCTTACAAGCTCCTTCATCATCATCATCATCGTCGTCTTCGGTTAATAGGCCGAGCCCATCTTCCGGAAGGGGCGAGCTTTCTTCGGTTGATACTCCATTAGCCCCATCAAATTCCAAAAGAAAGAGCTTGGTGTTGGTTGTGGCTCCCATTGCAGGTGTTGCTGCTGCAATTTTTCTGCTTATTCCAATTTATCTGTATTGTTTCAAAGGGAGAAATGAAGAAGCCTCCAAGAGTTCAAGTTCATTGGTAGTTCACCCTAGAGATCCATCTGATTCAGACAATGTGGTAAAGCTTGTTGTAGCTAGCAATGGAAGAAGCATTTCCACCACAGTTTCAGGAAGTGGTTCTAGGAACCTAAACACAGTCCTTCGAGACATTACCAAGAATTTCGCGCCTGAGAATGAGCTCGGCCGAGGTGGATTCGGGGGTGTTTACAAGGGAGAATTGGATGATGGGACTAAAGTTGCAGTAAAGAGAATGGAAGCTGGTGTGATTAGCAACAAAGCCTTAGATGAATTCCAGTCTGAAATCGCAGTTCTTTCAAAAGTCCGGCACCGGAATTTGGTCTCTCTTTTAGGCTATTCAGTTGAAGGGACAGAAAGGCTTCTAGTCTATGAGTTTCTGCCACAAGGTGCTCTTAGCAAGCATCTCTTCCATTGGAAGAGCTTGCAATTGGAACTGCTTTCGTGGAAGCGAAGGCTTAACATTGCATTGGATGTTGCTAGAGGAATGGAATATCTTCATACTTTGGCTCACCAAAGCTTCATTCATAGATATCTTAAGTCATCAAATATTTTGCTTGGATGTTGCTTGATGAAGGCTGTTTTCTTGGCATCTCCGGGGTACATGGGGATTTGA 939 0.4356 LGLSGNNISGPLPSFDKSLKIVIDGSSLQAPSSSSSSSSSVNRPSPSSGRGELSSVDTPLAPSNSKRKSLVLVVAPIAGVAAAIFLLIPIYLYCFKGRNEEASKSSSSLVVHPRDPSDSDNVVKLVVASNGRSISTTVSGSGSRNLNTVLRDITKNFAPENELGRGGFGGVYKGELDDGTKVAVKRMEAGVISNKALDEFQSEIAVLSKVRHRNLVSLLGYSVEGTERLLVYEFLPQGALSKHLFHWKSLQLELLSWKRRLNIALDVARGMEYLHTLAHQSFIHRYLKSSNILLGCCLMKAVFLASPGYMGI 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213571g00003 312 Gene3D Phosphorylase Kinase; domain 1 122 234 - -
Stsc213571g00003 312 ProSiteProfiles Protein kinase domain profile. 157 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc213571g00003 312 FunFam receptor-like protein kinase FERONIA 125 234 - -
Stsc213571g00003 312 ProSitePatterns Protein kinases ATP-binding region signature. 163 185 IPR017441 GO:0005524
Stsc213571g00003 312 Gene3D Transferase(Phosphotransferase) domain 1 236 301 - -
Stsc213571g00003 312 Pfam Protein tyrosine and serine/threonine kinase 160 295 IPR001245 GO:0004672|GO:0006468
Stsc213571g00003 312 SUPERFAMILY Protein kinase-like (PK-like) 136 295 IPR011009 -
Stsc213571g00003 312 MobiDBLite consensus disorder prediction 27 63 - -
Stsc213571g00003 312 PANTHER OSJNBA0070M12.3 PROTEIN 2 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213571g00003 Stsc-Chr213571 8320 9319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213571g00003 148 294 Receptor kinase-like Gene Family AT4G38830 52.381 1.83e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Stsc213571g00003 PK_Tyr_Ser-Thr 4.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213571g00003 K00924 - qsa:O6P43_009671 371.318