Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213552g00001 ATGAATAACAATAGTAGTCCAAAAGATCCATCAGATTTTCCACTAAAACAAGAGACTGATCATCATCATCAACAACAACATGAAAAGCCATCATCATCAGCAGCAGCAAAGGCTTCAACAACATCATCATCATCATCACAGTGGTTAAGGCTGAAGGATCCAAGAATTGTTAGGGTATCAAGAGCATTTGGAGGAAAAGACAGGCACAGCAAGGTTTGCACAATAAGAGGGTTAAGAGACAGGCGTGTGAGGCTTTCAGTTCCAACAGCAATTCAGCTCTATGATCTTCAAGATAGGTTAGGGCTTAATCAACCTAGTAAAGTTGTTGATTGGTTGTTGAATGCTGCTAAGCATGAAATTGATGAGCTTCCACCTTTGCCTAATATCACTAATCCATTCACCCTTGCTGGTTCTTCTTCTTCTTCTTCTATCATCAATAATACTAATGAAGCTGGCACCTCAATGTTCAATATCAACAGGAGCATTCATCAGTGGCAAGGCTTAGCACAAAGTTATTCTAAGTGGAATAATAACAAGTCAAAGTCTTCATCATCATTTACTAAACAAGAAGATAATCAAATGGTCACTGAAGAGGATGATAACAATAATAAGGAAGAAGATGAAGAAGGTGCAGCAAATGTTGTTTCTAATAATACAAATCATCATCATCATCCTTCATTCCTAGGTTTGCTGAACACTATGCCAATTGCTGCTGGTAACTACCAATTTGAGGCACATAATAATGATGTTAATGTTGCTCAATTGGGAAACCATCATCATCATCATGGATTCATTACAAACCAAACAGATTTACAAAGCATAAATGTTGTGCCATTTCCATCAACATTGTCCTTATCAACACAGTCATATTTCCCTTCACATTCATCATCAGAAGCAATGGAGGACAACAGCAGCATGCATCAGATGCTGACCTCTCATCATCATCTTCATCAAAATCTCTTCACAAATAATAATAATCTTCCATCTTTCAGCTTGGCTATGATGAGCACTCCAATCCTTCTCCACCATCCTCCCAACACAAGAGAAAGTAGTACTCAATCCCACCATCATCATCACAAAGACCACCATTTTCCTTCTTCCAAGTGA 1107 0.3821 MNNNSSPKDPSDFPLKQETDHHHQQQHEKPSSSAAAKASTTSSSSSQWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPNITNPFTLAGSSSSSSIINNTNEAGTSMFNINRSIHQWQGLAQSYSKWNNNKSKSSSSFTKQEDNQMVTEEDDNNNKEEDEEGAANVVSNNTNHHHHPSFLGLLNTMPIAAGNYQFEAHNNDVNVAQLGNHHHHHGFITNQTDLQSINVVPFPSTLSLSTQSYFPSHSSSEAMEDNSSMHQMLTSHHHLHQNLFTNNNNLPSFSLAMMSTPILLHHPPNTRESSTQSHHHHHKDHHFPSSK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213552g00001 368 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 21 324 IPR005333 GO:0003700
Stsc213552g00001 368 MobiDBLite consensus disorder prediction 1 49 - -
Stsc213552g00001 368 MobiDBLite consensus disorder prediction 176 191 - -
Stsc213552g00001 368 Pfam TCP family transcription factor 65 209 IPR017887 -
Stsc213552g00001 368 MobiDBLite consensus disorder prediction 29 49 - -
Stsc213552g00001 368 MobiDBLite consensus disorder prediction 13 28 - -
Stsc213552g00001 368 MobiDBLite consensus disorder prediction 341 368 - -
Stsc213552g00001 368 ProSiteProfiles TCP domain profile. 65 123 IPR017887 -
Stsc213552g00001 368 MobiDBLite consensus disorder prediction 176 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213552g00001 Stsc-Chr213552 1301 2407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213552g00001 48 127 TCP Transcription Factor Family AT3G02150 87.500 1.71e-47 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc213552g00001 TCP 6.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213552g00001 - - var:108327895 252.292