Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213482g00001 TATATCCTTCATGATTGGGATGATGAAAACTGCTTGAAGCTCTTAAAGAATTGTTACAAGACCATTCCCAGTGATGGGAAGGTGATTGTGGTGGACACCATTCTTCCTGTTGTGCCTGAGCCAACACCTATTGCCAAGAAAGCATTTAGATTTGATGTTTCCATGATGGCTCAGACTCTAAGAGGAAAGGAAAGAACCCGGCAAGAATTCATGCACTTGGCTAAAGGATCTGGATTCACTTCCATAAGATTTGCGTGCTGTGTCTCTACTAGCATATGGGTCATGGAGTTCTATAAGTAG 300 0.4233 YILHDWDDENCLKLLKNCYKTIPSDGKVIVVDTILPVVPEPTPIAKKAFRFDVSMMAQTLRGKERTRQEFMHLAKGSGFTSIRFACCVSTSIWVMEFYK 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213482g00001 99 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 97 IPR029063 -
Stsc213482g00001 99 PANTHER O-METHYLTRANSFERASE 2 98 IPR016461 GO:0008168
Stsc213482g00001 99 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 99 IPR016461 GO:0008168
Stsc213482g00001 99 Gene3D Vaccinia Virus protein VP39 2 88 IPR029063 -
Stsc213482g00001 99 Pfam O-methyltransferase domain 2 79 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213482g00001 Stsc-Chr213482 729 1028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213482g00001 1 86 Monolignol Biosynthesis Gene Families AT5G54160 48.837 2.75e-25 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213482g00001 K13066 - aip:107606823 140.969