Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213460g00002 ATGGCAAAGAACGACTGGGGCAATTCCATCTATCCATTTGTTCCTGGGCATGAAGTGGTTGGCATAATTACAGAGGTTGGAAACAAGGTACAAAAGTACAAGGTTGGAGACAAAGTGGGTGTGGGATACTTAGTTGAATCTTGTCGCTCCTGCCAAAATTGTATTGAAAATCTTGAAAATTACTGTCCTAAAAGCATTTTAACACAAGGTGGCAAACACATTGACGGAACCACCACCTATGGAGGCTACTCTGATTCAATGGTTGTTGATGAACACTTTGTGATTGGAATTCCTGAAGGGCTACCTCTTGATGCTGCTGCTCCTCTTTTTTGTGCTGGGGTTACAGTTTATAGCCCTCTGAAATATTATGGGCTTGATAAGCCTGGTTTGCATGTGGGTGTAGTTGGGCTTGGTGGGCTTGGCCATATGGCAGTCAAGTTTGCCAAAGCCCATGGGCTCAAGGTCACTGTCATTAGTACTTCACCCAACAAAAAAGAGGAAGCAATAATGAATTTGGGAGCTGATTCATTTTTGGTTAGTCGTGATCCAGACCAAATGGAGG 562 0.4359 MAKNDWGNSIYPFVPGHEVVGIITEVGNKVQKYKVGDKVGVGYLVESCRSCQNCIENLENYCPKSILTQGGKHIDGTTTYGGYSDSMVVDEHFVIGIPEGLPLDAAAPLFCAGVTVYSPLKYYGLDKPGLHVGVVGLGGLGHMAVKFAKAHGLKVTVISTSPNKKEEAIMNLGADSFLVSRDPDQME 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213460g00002 187 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 16 30 IPR002328 GO:0008270|GO:0016491
Stsc213460g00002 187 Gene3D - 1 111 - -
Stsc213460g00002 187 Pfam Alcohol dehydrogenase GroES-like domain 6 95 IPR013154 -
Stsc213460g00002 187 Gene3D - 112 187 - -
Stsc213460g00002 187 PANTHER ALDEHYDE REDUCTASE 1 187 IPR047109 GO:0016616
Stsc213460g00002 187 SUPERFAMILY GroES-like 3 129 IPR011032 -
Stsc213460g00002 187 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 101 186 IPR036291 -
Stsc213460g00002 187 FunFam Cinnamyl alcohol dehydrogenase 112 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213460g00002 Stsc-Chr213460 836 3943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213460g00002 1 187 Monolignol Biosynthesis Gene Families AT4G37980 69.519 2.32e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213460g00002 K23232 - gmx:100816901 306.99