Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213460g00001 ATGGAAGCATCAGAAGCTGAATTTGAGCATCCTAGGAAGGCATTTGGATGGGCAGCAAGAGATTCTTCAGGATTGCTCTCCCCTTTCAATTTCTCTAGAAGGGAAATTGGAGAGAAAGATGTTGCATTGAAAGTGTTGTACTGTGGTATATGCCACACGGACCTGCACATGGCAAAGAACGACTGGGGCAATTCCATCTATCCATTTGTTCCTGGGCATGAAGTGGTTGGCATAATTACAGAGGTTGGAAACAAGGTACAAAAGTACAAGGTTGGAGACAAAGTGGGTGTGGGATACTTAGTTGAATCTTGTCGCTCCTGCCAAAATTGTATTGAAAATCTTGAAAATTACTGTCCTAAAAGCATTTTAACACAAGGTGGCAAACACATTGACGGAACCACCACCTATGGAGGCTACTCTGATTCAATGGTTGTTGATGAACACTTTGTGATTGGAATTCCTGAAGGGCTACCTCTTGATGCTGCTGCTCCTCTTTTTTGTGCTGGGGTTACAGTTTATAGCCCTCTGAAATATTATGGGCTTGATAAGCCTGGTTTGCATGTGGGTGTAGTTGGGCTTGGTGGGCTTGGCCATATGGCAGTCAAGTTTGCCAAAGCCCATGGGCTCAAGGTCACTGTCATTAGTACTTCACCCAACAAAAAAGAGGAAGCAATAATGAATTTGGGAGCTGATTCATTTTTGGTTAGTCGTGATCCAGACCAAATGGAGG 730 0.4384 MEASEAEFEHPRKAFGWAARDSSGLLSPFNFSRREIGEKDVALKVLYCGICHTDLHMAKNDWGNSIYPFVPGHEVVGIITEVGNKVQKYKVGDKVGVGYLVESCRSCQNCIENLENYCPKSILTQGGKHIDGTTTYGGYSDSMVVDEHFVIGIPEGLPLDAAAPLFCAGVTVYSPLKYYGLDKPGLHVGVVGLGGLGHMAVKFAKAHGLKVTVISTSPNKKEEAIMNLGADSFLVSRDPDQME 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213460g00001 243 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 72 86 IPR002328 GO:0008270|GO:0016491
Stsc213460g00001 243 CDD CAD1 15 243 IPR047109 GO:0016616
Stsc213460g00001 243 Gene3D - 168 243 - -
Stsc213460g00001 243 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 242 IPR036291 -
Stsc213460g00001 243 FunFam Cinnamyl alcohol dehydrogenase 168 243 - -
Stsc213460g00001 243 FunFam Uncharacterized protein 17 167 - -
Stsc213460g00001 243 Gene3D - 17 167 - -
Stsc213460g00001 243 PANTHER ALDEHYDE REDUCTASE 7 243 IPR047109 GO:0016616
Stsc213460g00001 243 SUPERFAMILY GroES-like 21 185 IPR011032 -
Stsc213460g00001 243 Pfam Alcohol dehydrogenase GroES-like domain 39 151 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213460g00001 Stsc-Chr213460 836 3943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213460g00001 12 243 Monolignol Biosynthesis Gene Families AT4G37980 69.828 8.28e-115 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213460g00001 K23232 - gmx:100816901 404.831