Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213440g00001 ATGTTGTATTCCAAAAATGGGTACTGGCAGGTTAGTGTTCCATGCAGCAGTTTGCTGACCATAGTGACAGTTAGATGTGGGCATTGTGCCAATCTGCTATCAGTTAACATGGGAGCATCTCTTCAAACATTGCCTCCTCAAGACCCTCATCATCATCAGAAGCAGCACCTGAGCTTCCAAGATGCAAGCAGCAAGGAACTGGGATCATCTTCATCCAGATGCAACAAGTTAGCAGCAGCATTTGATCCTGTAGACCATGATCCCCAACCTAGGATCCCTCCCATTCGTCCTCCGGAAAAGAGACAACGCGTTCCTTCTGCTTATAACCGATTCATTAAGTAA 342 0.462 MLYSKNGYWQVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQTLPPQDPHHHQKQHLSFQDASSKELGSSSSRCNKLAAAFDPVDHDPQPRIPPIRPPEKRQRVPSAYNRFIK 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213440g00001 113 PANTHER PROTEIN YABBY 6-RELATED 9 113 IPR006780 GO:0007275
Stsc213440g00001 113 MobiDBLite consensus disorder prediction 60 76 - -
Stsc213440g00001 113 MobiDBLite consensus disorder prediction 43 113 - -
Stsc213440g00001 113 Pfam YABBY protein 10 113 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213440g00001 Stsc-Chr213440 6239 7671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213440g00001 11 113 C2C2-YABBY Transcription Factor Family AT1G08465 56.075 1.20e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Stsc213440g00001 YABBY 5.3e-30 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213440g00001 K25796 - gmx:100785458 140.584