Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213402g00002 ATGTCAACCAGAAAAACCAGAGGAGCCAGACACCACCGTAATCACCACCACGACGATGACTTCACTCCAAAGCCTCTCCACCAACAACAACAGCACCATAGTTCCACTCCTCCCACTCACCACCACCATCACCAACAACCAAAATTGCGTTTCGTCAAGAAATCAGAACTTGATTCTTCTTCTGCTTCTGATTCACTCCTTACCTCCGATCCTGTGGCGCCGCCTGCTTTCGATAACGTGACACCGCCGCCACACGAGAGCCACAAAGAAGAAGAGAACAATAATATCGGTGCCAGCGATGCTGTGACAGTAACAAGAGAGGTAGATCACATGGCTCGTGAAAGCAACAGCAAGGAGGGGGATGACGACGATGCTGATGATTATGTTGTGGATAGGCTTCATAGGTTATTGGATGCTCTGGAAGAGCCTCAGTTAATGGAGGAGCATCTCAGTACCAATGACCAATTGCAGCAAGATGAGTTACTTGTAGTGGAGTCGATATATGGAGAGAATGTTAAGAATCTGGAAAGCTGCAAAGGACTCCGTTGTCTTCAGATTCAAATACACATTGAAGTTTTGGGTGAAATTGCCGTTGTTGCCAAGCTGAACTCTTCTAATGAACCTGATGTTGCAAGCGGCAATTCGGATGACTTTTTATACTCTTTCAAAGTTCAGTATCTTCCTCCAATTGTTTTGACATGCTTATTGCCGAAGTCATATCCAAGCCACCAACCACCTTTATTTACAGTCTCTGTTCAATGGTTGGAATCTTTAGATATTTTAAGTCTATGCTCCCAGTTGGATTCTATATGGGCAGAGCAGCAAGGGCAAGAAGTAATATACCAGTGGGTAGATTGGTTACAAAGTTCTACTCTTTCTCACCTGGGATTTGATAAGGAAATTATACTTGGTCGGAATGGCGTGAATTGTGTTGGAGATGATCGAGTTGTTTCAGGATCCATATCCCTTGATACTGCTATTCCTTTTTTGCGAGGTTACAACAAAGAGCGGCATAATGAGAACTTCCTCAAAGAATTACATGAGTGTAGTATTTGCTATAGCGAATACCCAGGTACTGAGTTTGTCCGGTTACCATGTCAGCATTTCTTTTGCTTGAAATGCTTGCAGACCTTCACTCAGATGCATGTAAAAGAAGGCACCATTAGTAGTCTTCAATGTCCTGATTCAAAATGTAAGGTTATGATTCCACCTGGCCTTTTGAAACACTTGCTTGGTGATGAAGAGTACGAGCGCTGGGAATCCATGATGCTGGAGAAAACACTTGCATCAATGTCTGATGTTGCCTATTGCCCAAGGTGTGAAACACCTTGTATAGAGGATGAAGATCAGCATGCTCAATGCTCAAAATGCTTTTTTAGCTTTTGTACTCTTTGTCGGGAACGACGCCATGTTGGCATAGCATGCATGACACTAGATATGAAACTTCAAATTTTGCAGGATCGTCAGAATTCGTCCCAATTAAAGGAAGATCAAAAGCTAAGGGAGCGGGAGAAGATCAATGAAATGCTTAGTATAAAAGAAATTCATCGAGATTCCAAGTTGTGCCCTTCTTGTAGCATGGCAATCAATAGAACTGAAGGTTGTAACAAAATGAAGTGCAGTAACTGTGAAGCATATTTTTGTTACCGTTGCAACAAGTTAATTGATCCATCGGATCCATATGGTCATTTCAGGGATGGATCCTGTGAATTGTTCCCACAAGAAATGATTGAAAACTGGCAAGAGCGCATAAACCATCGGCAGGTTGTAGGACAATTGCAGGCTGAACTCTTTCCTCAACGTGGCCTGCCCTGTCCTAACTGTCGTCAGTTCAATGCAAAGGTTGGAAACAATAATCACATGTTTTGCTGGGCATGCCAAAGCCATTACTGCTACTTGTGCAACGAAATCGTGAGGCGTGGCTCTAAGCATTATGGTCCAAAGGGCTGCAAACAGCACACAGAGGGATAA 1971 0.4328 MSTRKTRGARHHRNHHHDDDFTPKPLHQQQQHHSSTPPTHHHHHQQPKLRFVKKSELDSSSASDSLLTSDPVAPPAFDNVTPPPHESHKEEENNNIGASDAVTVTREVDHMARESNSKEGDDDDADDYVVDRLHRLLDALEEPQLMEEHLSTNDQLQQDELLVVESIYGENVKNLESCKGLRCLQIQIHIEVLGEIAVVAKLNSSNEPDVASGNSDDFLYSFKVQYLPPIVLTCLLPKSYPSHQPPLFTVSVQWLESLDILSLCSQLDSIWAEQQGQEVIYQWVDWLQSSTLSHLGFDKEIILGRNGVNCVGDDRVVSGSISLDTAIPFLRGYNKERHNENFLKELHECSICYSEYPGTEFVRLPCQHFFCLKCLQTFTQMHVKEGTISSLQCPDSKCKVMIPPGLLKHLLGDEEYERWESMMLEKTLASMSDVAYCPRCETPCIEDEDQHAQCSKCFFSFCTLCRERRHVGIACMTLDMKLQILQDRQNSSQLKEDQKLREREKINEMLSIKEIHRDSKLCPSCSMAINRTEGCNKMKCSNCEAYFCYRCNKLIDPSDPYGHFRDGSCELFPQEMIENWQERINHRQVVGQLQAELFPQRGLPCPNCRQFNAKVGNNNHMFCWACQSHYCYLCNEIVRRGSKHYGPKGCKQHTEG 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213402g00002 656 CDD Rcat_RBR_RNF14 507 572 IPR047548 GO:0008270
Stsc213402g00002 656 SMART RWD2001b 159 294 IPR006575 GO:0005515
Stsc213402g00002 656 SUPERFAMILY UBC-like 150 289 IPR016135 -
Stsc213402g00002 656 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 158 564 IPR031127 GO:0004842|GO:0016567
Stsc213402g00002 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 432 IPR013083 -
Stsc213402g00002 656 SUPERFAMILY RING/U-box 417 480 - -
Stsc213402g00002 656 CDD BRcat_RBR_RNF14 428 479 - -
Stsc213402g00002 656 SMART ring_2 605 634 IPR001841 -
Stsc213402g00002 656 SMART ring_2 349 396 IPR001841 -
Stsc213402g00002 656 SMART ring_2 437 525 IPR001841 -
Stsc213402g00002 656 FunFam RBR-type E3 ubiquitin transferase 490 599 - -
Stsc213402g00002 656 CDD RING-HC_ITT1-like 343 402 - -
Stsc213402g00002 656 Gene3D - 489 597 - -
Stsc213402g00002 656 ProSitePatterns Zinc finger RING-type signature. 366 375 IPR017907 -
Stsc213402g00002 656 SUPERFAMILY RING/U-box 508 564 - -
Stsc213402g00002 656 MobiDBLite consensus disorder prediction 1 101 - -
Stsc213402g00002 656 Pfam RWD domain 155 289 IPR006575 GO:0005515
Stsc213402g00002 656 FunFam RBR-type E3 ubiquitin transferase 344 428 - -
Stsc213402g00002 656 ProSiteProfiles RWD domain profile. 159 294 IPR006575 GO:0005515
Stsc213402g00002 656 SUPERFAMILY RING/U-box 344 428 - -
Stsc213402g00002 656 ProSiteProfiles TRIAD supradomain profile. 345 574 IPR044066 -
Stsc213402g00002 656 ProSiteProfiles Zinc finger RING-type profile. 349 397 IPR001841 -
Stsc213402g00002 656 Pfam IBR domain, a half RING-finger domain 417 475 IPR002867 GO:0008270
Stsc213402g00002 656 Pfam IBR domain, a half RING-finger domain 511 554 IPR002867 GO:0008270
Stsc213402g00002 656 SUPERFAMILY RING/U-box 600 653 - -
Stsc213402g00002 656 SMART ibrneu5 417 475 IPR002867 GO:0008270
Stsc213402g00002 656 SMART ibrneu5 504 569 IPR002867 GO:0008270
Stsc213402g00002 656 Gene3D Ubiquitin Conjugating Enzyme 146 296 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213402g00002 Stsc-Chr213402 4149 8499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213402g00002 344 577 ARIADNE family AT3G27710 23.967 3.64e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213402g00002 K11971 - gmx:100500662 920.998