Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213402g00001 ATGTCAACCAGAAAAACCAGAGGAGCCAGACACCACCGTAATCACCACCACGACGATGACTTCACTCCAAAGCCTCTCCACCAACAACAACAGCACCATAGTTCCACTCCTCCCACTCACCACCACCATCACCAACAACCAAAATTGCGTTTCGTCAAGAAATCAGAACTTGATTCTTCTTCTGCTTCTGATTCACTCCTTACCTCCGATCCTGTGGCGCCGCCTGCTTTCGATAACGTGACACCGCCGCCACACGAGAGCCACAAAGAAGAAGAGAACAATAATATCGGTGCCAGCGATGCTGTGACAGTAACAAGAGAGGTAGATCACATGGCTCGTGAAAGCAACAGCAAGGAGGGGGATGACGACGATGCTGATGATTATGTTGTGGATAGGCTTCATAGGTTATTGGATGCTCTGGAAGAGCCTCAGTTAATGGAGGAGCATCTCAGTACCAATGACCAATTGCAGCAAGATGAGTTACTTGTAGTGGAGTCGATATATGGAGAGAATGTTAAGAATCTGGAAAGCTGCAAAGGACTCCGTTGTCTTCAGATTCAAATACACATTGAAGTTTTGGGTGAAATTGCCGTTGTTGCCAAGCTGAACTCTTCTAATGAACCTGATGTTGCAAGCGGCAATTCGGATGACTTTTTATACTCTTTCAAAGTTCAGTATCTTCCTCCAATTGTTTTGACATGCTTATTGCCGAAGTCATATCCAAGCCACCAACCACCTTTATTTACAGTCTCTGTTCAATGGTTGGAATCTTTAGATATTTTAAGTCTATGCTCCCAGTTGGATTCTATATGGGCAGAGCAGCAAGGGCAAGAAGTAATATACCAGTGGGTAGATTGGTTACAAAGTTCTACTCTTTCTCACCTGGGATTTGATAAGGAAATTATACTTGGTCGGAATGGCGTGAATTGTGTTGGAGATGATCGAGTTGTTTCAGGATCCATATCCCTTGATACTGCTATTCCTTTTTTGCGAGGTTACAACAAAGAGCGGCATAATGAGAACTTCCTCAAAGAATTACATGAGTGTAGTATTTGCTATAGCGAATACCCAGGTACTGAGTTTGTCCGGTTACCATGTCAGCATTTCTTTTGCTTGAAATGCTTGCAGACCTTCACTCAGATGCATGTAAAAGAAGGCACCATTAGTAGTCTTCAATGTCCTGATTCAAAATGTAAGGTTATGATTCCACCTGGCCTTTTGAAACACTTGCTTGGTGATGAAGAGTACGAGCGCTGGGAATCCATGATGCTGGAGAAAACACTTGCATCAATGTCTGATGTTGCCTATTGCCCAAGGTGTGAAACACCTTGTATAGAGGATGAAGATCAGCATGCTCAATGCTCAAAATGCTTTTTTAGCTTTTGTACTCTTTGTCGGGAACGACGCCATGTTGGCATAGCATGCATGACACTAGATATGAAACTTCAAATTTTGCAGGATCGTCAGAATTCGTCCCAATTAAAGGAAGATCAAAAGCTAAGGGAGCGGGAGAAGATCAATGAAATGCTTAGTATAAAAGAAATTCATCGAGATTCCAAGTTGTGCCCTTCTTGTAGCATGGCAATCAATAGAACTGAAGGTTGTAACAAAATGAAGTGCAGTAACTGTGAAGCATATTTTTGTTACCGTTGCAACAAGTTAATTGATCCATCGGATCCATATGGTCATTTCAGGTATTTGGTTTTGTTAAAATCATACAATTTTTTTTCTTTCTTTCATTCTTCTGCATAG 1752 0.4201 MSTRKTRGARHHRNHHHDDDFTPKPLHQQQQHHSSTPPTHHHHHQQPKLRFVKKSELDSSSASDSLLTSDPVAPPAFDNVTPPPHESHKEEENNNIGASDAVTVTREVDHMARESNSKEGDDDDADDYVVDRLHRLLDALEEPQLMEEHLSTNDQLQQDELLVVESIYGENVKNLESCKGLRCLQIQIHIEVLGEIAVVAKLNSSNEPDVASGNSDDFLYSFKVQYLPPIVLTCLLPKSYPSHQPPLFTVSVQWLESLDILSLCSQLDSIWAEQQGQEVIYQWVDWLQSSTLSHLGFDKEIILGRNGVNCVGDDRVVSGSISLDTAIPFLRGYNKERHNENFLKELHECSICYSEYPGTEFVRLPCQHFFCLKCLQTFTQMHVKEGTISSLQCPDSKCKVMIPPGLLKHLLGDEEYERWESMMLEKTLASMSDVAYCPRCETPCIEDEDQHAQCSKCFFSFCTLCRERRHVGIACMTLDMKLQILQDRQNSSQLKEDQKLREREKINEMLSIKEIHRDSKLCPSCSMAINRTEGCNKMKCSNCEAYFCYRCNKLIDPSDPYGHFRYLVLLKSYNFFSFFHSSA 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213402g00001 583 SMART ibrneu5 504 558 IPR002867 GO:0008270
Stsc213402g00001 583 SMART ibrneu5 417 475 IPR002867 GO:0008270
Stsc213402g00001 583 MobiDBLite consensus disorder prediction 1 101 - -
Stsc213402g00001 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 432 IPR013083 -
Stsc213402g00001 583 SMART RWD2001b 159 294 IPR006575 GO:0005515
Stsc213402g00001 583 SUPERFAMILY UBC-like 150 289 IPR016135 -
Stsc213402g00001 583 ProSiteProfiles RWD domain profile. 159 294 IPR006575 GO:0005515
Stsc213402g00001 583 ProSiteProfiles TRIAD supradomain profile. 345 577 IPR044066 -
Stsc213402g00001 583 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 154 559 IPR031127 GO:0004842|GO:0016567
Stsc213402g00001 583 FunFam RBR-type E3 ubiquitin transferase 344 428 - -
Stsc213402g00001 583 Pfam IBR domain, a half RING-finger domain 417 475 IPR002867 GO:0008270
Stsc213402g00001 583 Pfam IBR domain, a half RING-finger domain 511 554 IPR002867 GO:0008270
Stsc213402g00001 583 ProSiteProfiles Zinc finger RING-type profile. 349 397 IPR001841 -
Stsc213402g00001 583 CDD BRcat_RBR_RNF14 428 479 - -
Stsc213402g00001 583 CDD Rcat_RBR_RNF14 507 566 IPR047548 GO:0008270
Stsc213402g00001 583 Gene3D - 489 568 - -
Stsc213402g00001 583 SUPERFAMILY RING/U-box 417 480 - -
Stsc213402g00001 583 CDD RING-HC_ITT1-like 343 402 - -
Stsc213402g00001 583 Gene3D Ubiquitin Conjugating Enzyme 146 296 IPR016135 -
Stsc213402g00001 583 ProSitePatterns Zinc finger RING-type signature. 366 375 IPR017907 -
Stsc213402g00001 583 Pfam RWD domain 155 289 IPR006575 GO:0005515
Stsc213402g00001 583 SMART ring_2 349 396 IPR001841 -
Stsc213402g00001 583 SMART ring_2 437 525 IPR001841 -
Stsc213402g00001 583 SUPERFAMILY RING/U-box 344 428 - -
Stsc213402g00001 583 SUPERFAMILY RING/U-box 508 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213402g00001 Stsc-Chr213402 4149 8499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213402g00001 349 564 C3H Transcription Factor Family AT2G31510 25.112 3.21e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213402g00001 K11971 - gmx:100500662 744.191