Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213373g00001 ATGGAAACTGCACCCGCCTGCTTCTTCTGCGGTGGAATCCCTGCAACTGCAACTGCCACAGCCACAGCAACTCCAAATTCCGTGCCTTTCCGTTGTGCCGTTGGAATCCCCTTCTCTTCTTCATTTGCCTCGCTCTGCCTCTTAGCTCGTACCAGACACGGCGGCGGCGGCGGCGCATCTGTTCTCCGCTCTTTGTGTTTGTCGTCAGTGTCATCTTCTTCTTCTTCGTCGGTCACCGGCCTCGGCCTAATTCGAAGCGCCGCGAACAGCGAAACGAAGCTTCCGGTTCCAAGTAAGGCCAAGAGAAGTAGAAGAAGAACGCGAACGGGCTCTCCTCCTACTACTCCTCCGCCTCTTACTCCGGAGAAAACTAACAGTAACGGTAACGGTGATGGTAACAGCAATGAGAATGGTGACCCTCTCGGGTGGAAGGATCTTGGAAAGAGCGTGGTGAGATGGATTCGGGAGGGCATGAGGGCGATGGCATCGGATTTCGCGGCGGCGGAGTTGCAGGGAGAAGGAGAATTCTCTGAGCTGATGCAGCGTATGGGGCCTGGACTCACTTTTGTGATCGAGGCTCAGCCTTATTTGAACGCTGTTCCGATGCCACTTGGTCTTGAAGTGATGTGCTTCAAGGCCTGCACACACTACCCAACTCTCTTTGATCACTTCCAGAGGGAGCTCCGCGAAGTTCTCCAGGATCTTCAAAATAAGTCCATGGTCGAAGACTGGCGCCAAACGCAGTCTTGGAAGCTGCTTAAAACTCTCGCCAATTCAGCTCAGCATCGGGCAGTGGCCAGAAAGATAGCCCATCCCCAGCCCAAGCCGGTCCAAGGTGTTTTAGGAATGGACTTCGACAATGTGAAAGCAATGCAGCAGAGGATCGAGGATTTCACCAACCGCATGTCTGAACTACTCCGTATTGAAAGGGATGCCGAATTAGAGTTCACTCAGGAGGAATTGGATGCTGTTCCTAGGCCACTGGATGATGCTTCCGATCCCTCAAGACCGACTGAGTTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTCTGTGACACCATTTGCAACTTAACTGCCATCAGTACCTCCACTGGACTTGGAGGAATGCATTTGGTGTTGTTCAAGGTTGAAGGTAACCATAGATTACCACCTACTACTCTTTCACCTGGAGATATGAGTGTACGCATAGACCGTATTCAAGGACTGGCTGATACACTTACCTATGAGCGCAACTGTGAAGCTCTAATGCTGCTTCAGAAGAATGGTTTGAGAAAGAAGAATCCTTCAATTGCTGTAGTAGCTACACTCTTTGGAGAAAAGGAAGATGTTGCATGGCTCGAGAAGAACAATTTTGTTGACTGGGAAGAAGAAAAATTAAATGGACTGTTAGAAAATGAAACATTCGATAGTTCTCAGCAGAGAGCAATTGCATTGGGTTTGAATAAGAAGAGGCCTGTATTGGTTATCCAAGGGCCTCCAGGTACAGGCAAGACTGGTTTGCTCAAGCAACTTATAGTATGTGCTGTTCAACAAGGTGAAAGGGTTCTAGTGACAGCACCAACGAATGCAGCTGTTGACAACATGGTTGAAAAGCTTTCAAATGTTGGATTAAATATTGTGCGAGTTGGAAATCCTGCTCGTATTTCAAAAGCTGTTGGATCAAAGTCTTTGGATGCAATTGTAAATGCGAAGCTTGCAAGTTTTCGAGAGGAGTATGAAAGGAAGAAGTCAAATCTAAGGAAGGATCTAAGACTTTGTTTAAAGGATGATTCACTAGCTGCGGGTATACGCCAACTTCTGAAACAGCTGGGAAGGTCCCTCAAGAAAAAAGAAAAGCAGACTATGAATGAAGTTTTATCTAGTGCGCAGGTTGTGCTTGCCACTAATACAGGAGCAGCTGATCCCTTGATTCGAAGTCTAGATACTTTTGACTTGGTTGTCATAGATGAAGCCGGACAGGCAATTGAACCATCTTGCTGGATTCCTATACTGCTCGGAAAGCGGTGTATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTTATATTGTCCAGAAAGGCCTTAGAAGGTGGCCTAGGAATATCACTACTGGAGAGAGCTACCGCATTGCATGAAGGGATTCTCACCACCAGGCTAACAACGCAATACCGTATGAATGATGCAATTGCTAGCTGGGCCTCGAAGGAGATGTATGGAGGATTGCTGAAGTCCTCTGAGTCTGTCTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTTAAGCCTACATGGATAACACAATGTCCGCTGCTATTGCTTGATACAAGAATGCCATATGGAAGTCTGTCGGTTGGTTGCGAAGAGCATCTGGACCCGGCAGGAACAGGCTCATTTTATAATGAAGGAGAAGCTGATATAGTTCTGCAGCATGTCCTTTCCTTGATTTATTCTGGTGTTAATCCAGCTGCCATTGTGGTGCAGTCCCCTTATGTCTCTCAAGTGCAGCTTCTGAGGGACATGCTTGCTGAGGTACCGGAAGCTGCTGGGACCGAGGTTGCAACAATTGATAGTTTTCAAGGTCGCGAAGCTGATGCAGTAATTTTATCCATGGTACGGTCAAACACACTGGGAGCTGTTGGATTTCTTGGTGATAGCAGAAGAATCAATGTTGCCATCACGAGGGCGCGCAAACATGTAGCCGTGGTCTGTGACAGCTCAACAATATGCCACAACACCTTCCTGGCGAGACTTCTGCGTCACATTCGACACTTTGGCCGGGTGAAGCATGCAGAACCAGGTAGTTTTGGGGGTTCTGGACTTGGGATGAACCCCATATTACCCTCCATTAATTAG 2832 0.4785 METAPACFFCGGIPATATATATATPNSVPFRCAVGIPFSSSFASLCLLARTRHGGGGGASVLRSLCLSSVSSSSSSSVTGLGLIRSAANSETKLPVPSKAKRSRRRTRTGSPPTTPPPLTPEKTNSNGNGDGNSNENGDPLGWKDLGKSVVRWIREGMRAMASDFAAAELQGEGEFSELMQRMGPGLTFVIEAQPYLNAVPMPLGLEVMCFKACTHYPTLFDHFQRELREVLQDLQNKSMVEDWRQTQSWKLLKTLANSAQHRAVARKIAHPQPKPVQGVLGMDFDNVKAMQQRIEDFTNRMSELLRIERDAELEFTQEELDAVPRPLDDASDPSRPTEFLVSHSQPQQELCDTICNLTAISTSTGLGGMHLVLFKVEGNHRLPPTTLSPGDMSVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSIAVVATLFGEKEDVAWLEKNNFVDWEEEKLNGLLENETFDSSQQRAIALGLNKKRPVLVIQGPPGTGKTGLLKQLIVCAVQQGERVLVTAPTNAAVDNMVEKLSNVGLNIVRVGNPARISKAVGSKSLDAIVNAKLASFREEYERKKSNLRKDLRLCLKDDSLAAGIRQLLKQLGRSLKKKEKQTMNEVLSSAQVVLATNTGAADPLIRSLDTFDLVVIDEAGQAIEPSCWIPILLGKRCILAGDQCQLAPVILSRKALEGGLGISLLERATALHEGILTTRLTTQYRMNDAIASWASKEMYGGLLKSSESVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSFYNEGEADIVLQHVLSLIYSGVNPAAIVVQSPYVSQVQLLRDMLAEVPEAAGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHVAVVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGSFGGSGLGMNPILPSIN 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213373g00001 943 Gene3D - 717 925 IPR027417 -
Stsc213373g00001 943 SMART AAA_5 484 699 IPR003593 GO:0016887
Stsc213373g00001 943 MobiDBLite consensus disorder prediction 320 339 - -
Stsc213373g00001 943 Pfam AAA domain 469 685 IPR041677 GO:0004386
Stsc213373g00001 943 CDD DEXXQc_SMUBP2 469 718 - -
Stsc213373g00001 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 906 IPR027417 -
Stsc213373g00001 943 Coils Coil 570 590 - -
Stsc213373g00001 943 Gene3D - 387 716 IPR027417 -
Stsc213373g00001 943 SMART ultradead3 465 717 IPR014001 -
Stsc213373g00001 943 Pfam AAA domain 695 898 IPR041679 -
Stsc213373g00001 943 CDD SF1_C_Upf1 719 915 IPR047187 -
Stsc213373g00001 943 Coils Coil 288 315 - -
Stsc213373g00001 943 MobiDBLite consensus disorder prediction 121 136 - -
Stsc213373g00001 943 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 398 926 - -
Stsc213373g00001 943 MobiDBLite consensus disorder prediction 92 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213373g00001 Stsc-Chr213373 931 7291 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213373g00001 455 658 Core DNA Replication Machinery Family AT1G08840 25.980 3.47e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213373g00001 - - aip:107625008 1645.56