Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213351g00001 ATGGAGGACCAAGCGAATCAGAACCAAGGCCAAGTTCCTCCACTGACGCAGCCTCCGCCACTTCCGGCGTCGGAATCTGAACCACCGGTGGAGGAGGAGGAAGAGGAGGAAGAAGACGATTCCAAGAAAGAGGAGGAGGAGCTTGTCGCCAAGGTTAACAGGCTCATGGAGAAGATCACTTCTGCGCCCGATAACCCTAAGCCCGCGGTTCTCCACGCCCTAGCCTCTATCCTCGAAACGCAAGAGTCACGATACATGGAAGAGAATGGTCATTCTTCTTCAACTAATGCCCGTGCTGCCCATAACATTGGGCGCCTTGGGAGCTTAATTCGGGAAAATGACGAGTTCTTCGAGTTGATATCTTCGAAGTTTCTGGCTGAAACCTCGTACTCAACCGCTGTTCAAGCTGCCACTGCTAGACTTCTCTTATGCTGTTCACTGACTTGGATTTATCCTCATGTTTTTGACGAACCTGTAATGGACTGCATCAAAGAGTGGGTGCTGGATGATAATGGTAGACTGTCTGCTGAAGAGCAACATCTGAAGCATAACTCGGGGAGAAGGGATGCCTCAGATTCTGAAATGTTGAAAACCTATTCAACGGGACTTCTTGCTGTGTGTTTGGTCAGTGGAGGTCAAGTTGTGGAGGACGTCTTGACATCTGGATTGTCAGCTAAGCTCATGCGTTATCTCCGTCTGCGTGTGCTTGGTGAGACAAGTAGTAGCCAGAAAGAGATTACTCATGTAGCAGATAGTAGGCATGCATCAGGGAATAGTTCAGTCAGAATTAGAGATGATGGTCGTGGAAGATTTCGCCAGCTCTTGGAATCTAGTCATTTAGACGATTCAAGGATGGTTGATGATAAATCTTTAGATGATATATCTCTTGAACGGGGTCCTGATAAAAGCATTAGTGGACAAGAAGATTCTTGGGTTGACGGCGAGCCCCCCAACTTGCTAGACAAAAGTGCTGATATCCGTGAGGCAGATGCTGATGATGAGGATAGATGGCACTGTAGAGATATAAGTGATGGAAGGATAAAATATGGCGAGCATGATGACAATCTGAGAGATGACTCTTCGAGGAGGCGCACAAATCGTGGAACTGGAAGATCCAAAGGAAAAGGAAGGGTCAACGAAGGGACTGTAGAAAGTGAAGCCATTCTTTCATCACCTGGTTCTGGTAGTCGATTAGGGCAGGGACGTAGTGTCAGAGATAGGACCCTACCAAGGAATGTCGATGTTAGAAGGGTGCCTGATTCCAAAAAGAATGCTAGGACAACTTCTGATGCTTCTGTTTTGGAAAGAGGGGATAATGATGATTGTTTCAGAGACTGCCGTATTGGAAGTAGAGATATTTCTGATATTGTTCGGAAAGCAGTCTGTGCTGCTGAAGCTGAAGCCAGATCTGCCAATGCACCTGAAGAAGCTGTTAAAGCCGCAGGTGATGCAGCTGCTGACCTTGTTAAAACCGCAGCTTCAGAGGAGTTTAAATCCGCTAATGATGAAGATGCTGCTGTTTTGGCTGCATCCAAGGCTGCATCAACTGTTGTTGACGCTGCATCTGCAGTTGAGGTTTCAAGGAGCTTCATCAGTATCAATACTGAAACAGAGAATGTGAGTGGTGCAGAACCGGAAATTGTTGAGGATGTTGAAGAGTACTTCATCCCGGATACTCAATTTCTTGCACAATTACGGGAGAAGTATTGTATTCAGTGTCTTGAGTTACTTGGAGAATATGTAGAAGTTCTTGGTCCTGTGTTACATGAAAAGGGAGTAGATGTGTGTCTTGCTCTTCTGCAGCAAAATTCCAAACATAGGGAGGCATCCAAGGTTGCTTTACTGTTGCCTGATGTCATGAAGCTGATATGTGCTTTGGCTGCTCATAGGAAATTTGCTGCACTATTTGTGGACCGTGGGGGAATCCAAAAGCTGCTAGCTGTCCCTAGAATGGCCCAAACTTACTTTGGCCTATCATCTTGTCTATTTACCATTGGTTCCCTTCAGGGAATAATGGAACGGGTTTGTGCTCTTCCATCAGACGTCGTTTTTCATGTTGTTGAGTTGGCTCTCCAACTCCTTGAGTGCAACCAAGATCAAGCCCGAAAGAATGCAGCATTGTTTTTTGCTGCTGCATTTGTCTTTAGAGCAGTTCTTGATGCTTTTGATTCTCAAGATGGATTACAGAAATTACTGGGTCTTCTAAATGATGCTGCATCGGTAAGAGCACATCTCCTGTTATTAGTTGATTCAATTCGTCCAAACAAAAGCAACCGCAGTGCTGCTAGGAATATCCCAAGTGTAAGGGCTGCGTACAAGCCACTTGACATCAGTAATGAGGCCATAGATGCAGTCTTCCTACAATTACAAAAAGATCGGAAGCTTGGTCCTGCATTTGTAAGAACTCGTTGGCCATCTGTGGAGAAATTCTTGGCTTATAGTGGCCATATTACCATGTTGGAATTGTGTCAGGCCCCACCTGTGGAACGATATCTGCATGATTTGCTCCAGTATGCATTGGGTGTTCTGCATATTGTGACTTTGGTACCTAGCAGTCGAAAGATGATTGTAAATGCAACACTAAGCAATAATCGTGTTGGTATAGCAGTGATTTTGGATGCTGCAAATATTGTTAGTAGTCATGTGGATCCAGAGATCATCCAGCCAGCGTTAAATGTTCTAGTCAACCTTGTTTGCCCTCCACCTTCAATCAGCAATAAACCTGCTTTGGCTACACAAAGTCAACAGTCTGCTTCTGCCCAAACCTCAAATGCTCCACCCTTGGAGGGTAGAGATAGGACTGCTGAACGTAATAATCCTGATCGAGCAGCCCCTGTTACCAATCTGATTGATCCTAGGGAAAGGAATGGGGAATCCAGTGCTGTAGATCGAGGCACGACGACAGTATCTAGTTCACAAACTGTAAATAACACCCCACAGACTCCTGGTCCTGCTGCAACCTCAGGATTAGTTGGCGACCGGAGAATCACTCTGGGTGCTGGAGCAGGTTGTGCTGGCCTTGCTGCACAACTAGAACAAGGATATCGTCAGGCAAGAGAAGCTGTTCGTTCTAATAATGGTATAAAGGTTCTTTTGCATCTCCTCCAACCACGCATATATTCACCACCTGCTGCTCTAGATTGCCTTCGTGCTCTAGCATGTCGAGTCCTACTTGGATTAGCTAGAGACGATACAATTGCACACATATTGACGAAGCTTCAGGTTGGGAAAAAGCTTTCCGAGCTAATTCGAGATTCGGGCAGCCAGACAACTGGAACAGAGCAGGGCAGGTGGCAAGCTGAACTTTCCCAGGCTGCAATTGAGTTGATTGGGATCGTGACTAATTCAGGGCGTGCAAGTACATTAGCTGCTACTGATGCAGCTACTCCTACCTTGAGGCGCATAGAAAGAGCAGCTATAGCTGCTGCTACTCCGATTACGTACCACTCAAGGGAACTTTTGCTCCTAATTCATGAACACCTACAGGCGTCTGGATTGACACAAGCTGCTTCTACATTGCTTAAAGAGGCTCAATTGACTCCCTTACCATCATTGGCTGCTCCATCTTCTCTTGCACAACAGCCAACTACACCAGAAGTTTCTTCAACATCAATTCAGTGGCCATGCGGCCGGGCCCCTTCTGGATTTCTCACCAATAAATTAAAGGCTAATGGAAGGGATGAGGATGCCAGCTTGAAAAGTGATTATTACTCTGCAAAGAAGAAGTCATTGACCTTCTCATCATCTTTTGGTTCACATTCAAAACGTCACCTTGCCGATTCACAGCAGCCTTCATCCAGAAAATGGTTAAGTGCTGGGAAGGAATCTTCAGATACTAGTATTTTAGAGATGGCATCTGAATCTTCAGGGAAACATAACATTGATACTGGATCTCAGTATAAGACTCCAATGAACATGCCAACAAAGCGCAAGTTTGCTGATTTAAAGGATATAGGAATGTTCTCATCATCCGCCAAGCGGTTAAATGTTGTTGATCAAGGACTTCGTTCTCCTATTTTTTCAAGTTCAATTCGGAAAAGCACCCAGCATGCTGATGCTGCTGGGCTTTCTACACCAATTTCTAACCTAAGAAGTACAGCCGACTATGGGGATGAGAACCAACACAGTATTTCAAATCCAAGTCAGATGACACCATCCTCACAAGTGTTAAATGATCTTCAACCCAACAACCCAGAACGAGATCGGCAATTTGTTTACAGCAGGTTTAGGCCATGGAGAACTTGTAGAGACGATGCTGGTGCCTTGTTAACATGCATTACCTTTCTTGAGGACTCTTCTCATATTGCTGTTGGGAGCCACAATGGGGAGCTAAAATTGTTTGACTCTAACAACAACAACGTGGTGGAGAGCTACACTGGTCACCAGTCTCCTTTGACGCTTGTTCAGTCTTTTGTTTCTGGTGAGACCCAGCTGTTGCTTTCATCGAGCTCCCAAGATGTTAGGCTGTGGGATGCAGCATCAATTTTGACTGGTCCTACCCATTCATTTGAAGGGTGCAAGGCTGCCAGGTTTAGCCATTCTGGAAATGTCTTTGCGGCCTTGTCAACAGAATCTACAAGGCGGGAAATCCTCTTGTATGATATCCAAACTTGTCAGCTAGAGTCGAAGTTGACAGATACATTTGCAGCTTCTACTGGACGTGGTCATGTGTATTCTTTAATCCACTTTAGCCCCTCTGACTCAATGTTGCTTTGGAATGGTGTCTTGTGGGACCGGCGGGTTTCTGGGCCTGTTCATCGTTTTGATCAGTTCACAGACTATGGAGGTGGAGGCTTTCATCCTGCTGGTAACGAGGTAATTATAAACTCAGAAGTCTGGGATCTGCGAAAGTTCAGGCTACTAAGAAGTGTGCCTTCGTTAGATCAAACATCAATAACATTCAATGCACGTGGTGATGTAATGTATGCTATCTTGAGGAGAAATCTTGAAGATGTGATGTCAGCAGTTCACACACGTCGGGTCAAGCATCCCCTTTTTGCTGCGTTCCGCACAGTCGATGCAATAAATTATTCTGACATAGCTACTATACCTGTGGATCGCTGTGTCCTTGATTTTGCAACTGAGCCTACAGATTCATTTGTCGGGTTGATTACTATGGATGATCAAGATGAGATGTATGCATCGGCTAGAGTCTATGAAATTGGTCGCCGGAGACCAACCGATGATGATTCTGATCCTGATGATGCAGAAAGTGAGGAGGAAGATGAGGACGACGACGATGATGATGGCGATGTAGATCCACTATTAGGCCCTGGTTTCCGTGGTGAGAGCGATAGTGATCCTGATGACATGAGCAATGATGATGACGATGATAGTATAAGTGAGCTTGATGATGATGAAGATGGTGACTTCATGTTGGATGATGTTGACTTCGACGGAGGACCTGGGATATTGGAGATTTTGACGGAGGGGGAAGAGGGGGATGATGATGAAGATAGTGAAGTACTCGAATCATTAAGTAGTGATGAAGAGGATTATGTGGGTAATGGCTTTGGTTATTAA 5523 0.4537 MEDQANQNQGQVPPLTQPPPLPASESEPPVEEEEEEEEDDSKKEEEELVAKVNRLMEKITSAPDNPKPAVLHALASILETQESRYMEENGHSSSTNARAAHNIGRLGSLIRENDEFFELISSKFLAETSYSTAVQAATARLLLCCSLTWIYPHVFDEPVMDCIKEWVLDDNGRLSAEEQHLKHNSGRRDASDSEMLKTYSTGLLAVCLVSGGQVVEDVLTSGLSAKLMRYLRLRVLGETSSSQKEITHVADSRHASGNSSVRIRDDGRGRFRQLLESSHLDDSRMVDDKSLDDISLERGPDKSISGQEDSWVDGEPPNLLDKSADIREADADDEDRWHCRDISDGRIKYGEHDDNLRDDSSRRRTNRGTGRSKGKGRVNEGTVESEAILSSPGSGSRLGQGRSVRDRTLPRNVDVRRVPDSKKNARTTSDASVLERGDNDDCFRDCRIGSRDISDIVRKAVCAAEAEARSANAPEEAVKAAGDAAADLVKTAASEEFKSANDEDAAVLAASKAASTVVDAASAVEVSRSFISINTETENVSGAEPEIVEDVEEYFIPDTQFLAQLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSKHREASKVALLLPDVMKLICALAAHRKFAALFVDRGGIQKLLAVPRMAQTYFGLSSCLFTIGSLQGIMERVCALPSDVVFHVVELALQLLECNQDQARKNAALFFAAAFVFRAVLDAFDSQDGLQKLLGLLNDAASVRAHLLLLVDSIRPNKSNRSAARNIPSVRAAYKPLDISNEAIDAVFLQLQKDRKLGPAFVRTRWPSVEKFLAYSGHITMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNATLSNNRVGIAVILDAANIVSSHVDPEIIQPALNVLVNLVCPPPSISNKPALATQSQQSASAQTSNAPPLEGRDRTAERNNPDRAAPVTNLIDPRERNGESSAVDRGTTTVSSSQTVNNTPQTPGPAATSGLVGDRRITLGAGAGCAGLAAQLEQGYRQAREAVRSNNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSQTTGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLTQAASTLLKEAQLTPLPSLAAPSSLAQQPTTPEVSSTSIQWPCGRAPSGFLTNKLKANGRDEDASLKSDYYSAKKKSLTFSSSFGSHSKRHLADSQQPSSRKWLSAGKESSDTSILEMASESSGKHNIDTGSQYKTPMNMPTKRKFADLKDIGMFSSSAKRLNVVDQGLRSPIFSSSIRKSTQHADAAGLSTPISNLRSTADYGDENQHSISNPSQMTPSSQVLNDLQPNNPERDRQFVYSRFRPWRTCRDDAGALLTCITFLEDSSHIAVGSHNGELKLFDSNNNNVVESYTGHQSPLTLVQSFVSGETQLLLSSSSQDVRLWDAASILTGPTHSFEGCKAARFSHSGNVFAALSTESTRREILLYDIQTCQLESKLTDTFAASTGRGHVYSLIHFSPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTSITFNARGDVMYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATEPTDSFVGLITMDDQDEMYASARVYEIGRRRPTDDDSDPDDAESEEEDEDDDDDDGDVDPLLGPGFRGESDSDPDDMSNDDDDDSISELDDDEDGDFMLDDVDFDGGPGILEILTEGEEGDDDEDSEVLESLSSDEEDYVGNGFGY 1840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 384 398 - -
Stsc213351g00001 1840 SMART Lish 1149 1181 IPR006594 GO:0005515
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 348 433 - -
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 1247 1305 - -
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 1719 1840 - -
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 291 321 - -
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 1732 1753 - -
Stsc213351g00001 1840 Gene3D - 1409 1733 IPR015943 GO:0005515
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 1809 1828 - -
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 961 985 - -
Stsc213351g00001 1840 Coils Coil 31 51 - -
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 348 366 - -
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 907 928 - -
Stsc213351g00001 1840 SUPERFAMILY WD40 repeat-like 1413 1643 IPR036322 GO:0005515
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 407 424 - -
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 1768 1795 - -
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 1247 1307 - -
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 1 47 - -
Stsc213351g00001 1840 PANTHER VPRBP PROTEIN-RELATED 1399 1835 IPR033270 GO:0016567
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 244 264 - -
Stsc213351g00001 1840 SUPERFAMILY ARM repeat 572 1089 IPR016024 -
Stsc213351g00001 1840 SMART WD40_4 1496 1534 IPR001680 GO:0005515
Stsc213351g00001 1840 SMART WD40_4 1408 1448 IPR001680 GO:0005515
Stsc213351g00001 1840 SMART WD40_4 1451 1491 IPR001680 GO:0005515
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 1344 1398 - -
Stsc213351g00001 1840 FunFam DDB1-and CUL4-associated factor homolog 1 1406 1733 - -
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 27 43 - -
Stsc213351g00001 1840 ProSiteProfiles LIS1 homology (LisH) motif profile. 1149 1181 IPR006594 GO:0005515
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 1187 1207 - -
Stsc213351g00001 1840 MobiDBLite consensus disorder prediction 907 990 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213351g00001 Stsc-Chr213351 2165 10294 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213351g00001 1435 1641 U-box Gene Family AT2G33340 25.446 6.92e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213351g00001 K11789 - mnt:21398028 1997.25