Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213348g00001 ATGAAGGTTCCACCAGCTTTGAACCAGTTCACCAAGACCCTTTACAAGAACCTTGCAACCAGCCTTTTCAAGATACTTCTGAAGTATAGGCCAGAAGATAAAGCTGAAAAGAAGGAGCGGCTTTTGAAAAGGGCTCAGGCTGAGACTGAGGGCAAAACTGTTGAAGCTAAGAAGTCCATTGTTGTGAAGTATGATCTCAATCATGTTACCTACCTTATTGAGCAGCTTCCAACATTGTGTAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAGGCTCGCCTCGGATCGATTATCCACAAGAAAACCGCGTCTGTTTTGTGCTTGACCAATGTCAAGAACGAAGACAAATTAGAGTTTAGCCGAGTCATAGAGGCTATTAAG 387 0.4341 MKVPPALNQFTKTLYKNLATSLFKILLKYRPEDKAEKKERLLKRAQAETEGKTVEAKKSIVVKYDLNHVTYLIEQLPTLCRKMEIPYCIVKGKARLGSIIHKKTASVLCLTNVKNEDKLEFSRVIEAIK 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213348g00001 129 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 75 118 IPR004038 -
Stsc213348g00001 129 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 122 - -
Stsc213348g00001 129 ProSitePatterns Ribosomal protein L7Ae signature. 80 97 IPR004037 GO:0042254|GO:1990904
Stsc213348g00001 129 Gene3D - 1 73 IPR029064 -
Stsc213348g00001 129 Gene3D - 74 129 IPR029064 -
Stsc213348g00001 129 PRINTS Ribosomal protein L7A family signature 24 37 IPR001921 -
Stsc213348g00001 129 PRINTS Ribosomal protein L7A family signature 58 78 IPR001921 -
Stsc213348g00001 129 SUPERFAMILY L30e-like 23 128 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213348g00001 Stsc-Chr213348 1502 2710 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213348g00001 1 129 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 70.470 6.49e-71 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213348g00001 K02936 - gmx:100775472 223.402