Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213344g00001 ATGAGAAAACCTTGTTGCGACAAAGAAGGTACCAACAAAGGTGCTTGGTCCAAGCAAGAAGACCAAAAACTCATTGATTACATCCAACTTCATGGTGAAGGCTGTTGGCGTTCCCTACCAAAAGCCGCAGGGCTTCATCGTTGCGGTAAAAGCTGCAGATTGAGATGGATAAATTATTTACGACCAGACATTAAACGCGGAAACTTTGACCAAGATGAAGAAGACCTCATCATCAAACTCCACGCCCTCCTTGGCAACCGGTGGTCACTTATAGCGGGAAGGTTGCCGGGACGCACAGACAATGAAATCAAGAACTACTGGAATTCTCACATCCGCCGAAAGCTAACCAACATGGGAATTGATCCAAACAACCACAAGTTGTATCAAACCTTTCCTCTTCCTAATAAACCTCCTCCTCATAGTGAACCATCCTTTGATTCCATGAACCAACACCAAACTCTGCTTCCTTCTAACAAACCTTCGTTTCGTGTTGATGACGACGATGGTGATGATAGGAGTTCCGACGACACTCATCACAGCTGTCTTCTAGAAACTTCCTCCGCATCCCACCAGCTTAATCTTGACCTAACCATTGCTTTCCCTGCTGATTCTTCGTCTACTACTACGTTATTTACTCTTGCGGAGGAAGACAATAATAAGGACAAGAATATGCCTAAACCATCAACTTCTGAGAACGTGCACGTGGATGAATCCACCCCTACCCTTCTTTTGTTTCAATAA 741 0.4453 MRKPCCDKEGTNKGAWSKQEDQKLIDYIQLHGEGCWRSLPKAAGLHRCGKSCRLRWINYLRPDIKRGNFDQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEIKNYWNSHIRRKLTNMGIDPNNHKLYQTFPLPNKPPPHSEPSFDSMNQHQTLLPSNKPSFRVDDDDGDDRSSDDTHHSCLLETSSASHQLNLDLTIAFPADSSSTTTLFTLAEEDNNKDKNMPKPSTSENVHVDESTPTLLLFQ 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213344g00001 246 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Stsc213344g00001 246 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Stsc213344g00001 246 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Stsc213344g00001 246 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 203 - -
Stsc213344g00001 246 SMART sant 65 113 IPR001005 -
Stsc213344g00001 246 SMART sant 12 62 IPR001005 -
Stsc213344g00001 246 MobiDBLite consensus disorder prediction 161 179 - -
Stsc213344g00001 246 MobiDBLite consensus disorder prediction 216 239 - -
Stsc213344g00001 246 CDD SANT 68 111 IPR001005 -
Stsc213344g00001 246 Gene3D - 68 130 - -
Stsc213344g00001 246 MobiDBLite consensus disorder prediction 142 159 - -
Stsc213344g00001 246 MobiDBLite consensus disorder prediction 225 239 - -
Stsc213344g00001 246 CDD SANT 15 60 IPR001005 -
Stsc213344g00001 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Stsc213344g00001 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Stsc213344g00001 246 FunFam MYB transcription factor 67 127 - -
Stsc213344g00001 246 MobiDBLite consensus disorder prediction 128 179 - -
Stsc213344g00001 246 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Stsc213344g00001 246 Gene3D - 13 65 - -
Stsc213344g00001 246 FunFam MYB-related transcription factor 12 65 - -
Stsc213344g00001 246 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213344g00001 Stsc-Chr213344 8315 9728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213344g00001 2 215 MYB Transcription Factor Family AT4G09460 51.965 1.49e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc213344g00001 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213344g00001 K09422 - qsu:112003172 306.605