Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc213321g00001 ATGGCACCCAATACAAATGTGAAAGCAGCATTTCGTGCGATGGCGGCTCTTGGGATTTCTGAATCACAAGTGAAACCGGTACTAAAGAAGCTTCTCAAATTGTATGATAAAAATTGGGCACTTATTGAAGAAGAGAACTATAGAGCTCTGGCAGATGCCATATTTGAGGATGTAGAAAATCAGGTTCCAGACCCAAAAAAGGTTCCAGAACAGAAAAAGAAAAAGAAGAATGTTTATGAGGAAGAGATGGAGGACGAAGAAGAAGCTGAGATGAATTTGGAGTTAAGCCGACCTTTGAAGAGGGTGCGTCTAAGAGGCCAGGAGAGTCAGTCTTTGCATCCTACGACTAGCTGTTCCCCCGCACTTGCCACCTCCCCATCAAAACAATCTGACACATCTGGTGGAAATTTGAGAACTGAAGTGCACCCCGCACCAGCACAGGATGTTATTGTTGACAAGGGTAAACAACCTGCGTCACCCCAACATAATCCCAGAAGAAGGAGATTGATATCTGAATCTGAAAGAGCCTCCCGATCAGTCTCATCTAAAGAACCAACAGCCAAACCAGAGCCATCAAGTGTTGGGGGTTCATCAATGAAGAAGAATGCAGCTGGAAAGCAAAATGGTCATGTCAATATGGCATCATCACAATGCAGGGCTGGAGATATTCTTCCTTACTCAAATGAAAGAGCTACATCTAGCATAGAGATAGCCTCATCTACCAAGGGAGAGGTGAAAATTTCTCTGAGCTGCAGTTCAGCTGTTGGGGGATCAGATTTTCATATGCCTAGTCGAGATCAAATTCTAAAAATGATAGAGGATAAATGTCTGCATTCATATAAAATCACTGACCCAAATTTTTCTATTCCGGAACTGTTGAAAGATATATGTGACTGCGTCCTGGAATTCAAAATTTATTCAGATGATTCCCGGAAAGTAGCTCTCATAACATCAGGGGATGATATGTTGAAGGAATCTGAGACACATAGCACTCTGAGTGTCACAGGAAATAAGGATTTGGATGCACTTTCTCTTCCACCAAATGGAACAATCCATGTTGAGTCTTCTGCCACCTTGCTCTCTCCCCGAAGTCCCTTTTCTCTTGCCAACCGCCCTGGTCAGGTTGATGCGGCACTGGTTTCCAGGGATGCTATACATTATTTGTCAGAAAATGACGATGGAATGGAGTTGGAAGATCCTACTTCCTCAAATTCGCGAAGTTTAGTGGTTGTTCCACAGAATGAACTTACAGCTGATGATATACGGTCGTTTCACGATGTTAATGACCTTACAAAAGCAGAGGAAAATGTTCAAATTTCATGGGTCAATGAATTTACTAATCAGTTCCTGCCTCCGTTTCACTACATACCCCAAAACCTTGTGTTCCAAAATGCTTCTGTGAACATTTTGCTTTCTCGCATTGTGGATGAGGACTGTTGCACATCTTGTATGGGCAATTGTCTCTCATCACCTACACCCTGTGCTTGTGCAAACAAAAATGGAGGGGAATTTGCATATAATGCTCGAGGCCTGTTGAAGGAAGGCTTTTTGGAAGGGTGCCTTGCCATCAGCCGTAACCCTAAACGATATTATATCTCTTGCAAAGACTGCCCCCTTGAAAGATCTAAGAATGATGATTGTTTAGAACCATGTAAAGGACACTTGAAGAGGAAATTTATTAAAGAATGTTGGAGAAAATGTGGTTGTGGGAAACAATGTGGCAATCGGATCGTTCAGCGTGGAATAACTTGCAACCTGCAGGTATTTCTCACTCCGGAAGGAAAAGGTTGGGGTCTTCGTACCTTAGAAGAGTTGCCAAGAGGTGCATTTGTGTGTGAGTTTGTTGGAGAGATATTAACCGTAAAAGAGTTGCAAGAGAGGAACATGAAATGTGCTGTAAATGGAGGTTATACGTACCCAGTGCTACTGGATGCAGATTGGGGTTCCAGATTTGTGAAGGATGAAGAAGCTCTATGCTTGGATGCTGCTTCCTTTGGTAACGCTGCTAGGTTTATCAATCACAGATGTTATGATTCTAATTTGGTTGAGATTCCAGTTGAAATTGAAGGCCCAGATCGTCACTACTATCATTTTGCCTTGTTCACTTGTAGAAAAGTAGCAGCAATGGAAGAGCTCACCTGGGACTATGGCATTGACTTTGATGGCCGTGATAATCCTATCAAGCTGTTCCAGTGCAAATGTGGAAGTAAATTCTGTAGGCATATGAAGCGAACAGATAGGTCACTGAGATCTTCACCATCAAATGGAAGATAA 2274 0.4261 MAPNTNVKAAFRAMAALGISESQVKPVLKKLLKLYDKNWALIEEENYRALADAIFEDVENQVPDPKKVPEQKKKKKNVYEEEMEDEEEAEMNLELSRPLKRVRLRGQESQSLHPTTSCSPALATSPSKQSDTSGGNLRTEVHPAPAQDVIVDKGKQPASPQHNPRRRRLISESERASRSVSSKEPTAKPEPSSVGGSSMKKNAAGKQNGHVNMASSQCRAGDILPYSNERATSSIEIASSTKGEVKISLSCSSAVGGSDFHMPSRDQILKMIEDKCLHSYKITDPNFSIPELLKDICDCVLEFKIYSDDSRKVALITSGDDMLKESETHSTLSVTGNKDLDALSLPPNGTIHVESSATLLSPRSPFSLANRPGQVDAALVSRDAIHYLSENDDGMELEDPTSSNSRSLVVVPQNELTADDIRSFHDVNDLTKAEENVQISWVNEFTNQFLPPFHYIPQNLVFQNASVNILLSRIVDEDCCTSCMGNCLSSPTPCACANKNGGEFAYNARGLLKEGFLEGCLAISRNPKRYYISCKDCPLERSKNDDCLEPCKGHLKRKFIKECWRKCGCGKQCGNRIVQRGITCNLQVFLTPEGKGWGLRTLEELPRGAFVCEFVGEILTVKELQERNMKCAVNGGYTYPVLLDADWGSRFVKDEEALCLDAASFGNAARFINHRCYDSNLVEIPVEIEGPDRHYYHFALFTCRKVAAMEELTWDYGIDFDGRDNPIKLFQCKCGSKFCRHMKRTDRSLRSSPSNGR 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc213321g00001 757 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 749 - -
Stsc213321g00001 757 Pfam SET domain 596 717 IPR001214 GO:0005515
Stsc213321g00001 757 SMART set_7 584 723 IPR001214 GO:0005515
Stsc213321g00001 757 MobiDBLite consensus disorder prediction 182 208 - -
Stsc213321g00001 757 ProSiteProfiles SET domain profile. 584 717 IPR001214 GO:0005515
Stsc213321g00001 757 MobiDBLite consensus disorder prediction 92 107 - -
Stsc213321g00001 757 SMART preset_2 427 568 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc213321g00001 757 MobiDBLite consensus disorder prediction 165 181 - -
Stsc213321g00001 757 MobiDBLite consensus disorder prediction 63 208 - -
Stsc213321g00001 757 MobiDBLite consensus disorder prediction 108 137 - -
Stsc213321g00001 757 ProSiteProfiles Pre-SET domain profile. 479 581 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc213321g00001 757 Pfam Ubiquitin-binding WIYLD domain 7 59 IPR018848 -
Stsc213321g00001 757 SUPERFAMILY SET domain 436 740 IPR046341 -
Stsc213321g00001 757 Gene3D - 1 60 IPR043017 -
Stsc213321g00001 757 CDD SET_SETDB-like 451 717 - -
Stsc213321g00001 757 MobiDBLite consensus disorder prediction 63 81 - -
Stsc213321g00001 757 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 756 IPR025776 -
Stsc213321g00001 757 Pfam Pre-SET motif 431 576 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc213321g00001 757 Coils Coil 72 96 - -
Stsc213321g00001 757 Gene3D SET domain 430 742 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc213321g00001 Stsc-Chr213321 3021 10573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc213321g00001 560 717 C2H2 Transcription Factor Family AT2G23740 41.250 8.65e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc213321g00001 Pre-SET 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc213321g00001 - - gmx:100778335 900.582